Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0889
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    34   0.017
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   1.9  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.5  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    27   2.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.4  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.4  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.8  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   7.8  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   7.8  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 124 CESCAVQFSVFRHKRVCGECERYYCSRCLRRGGG 225
           C  C  +F++FR K  C  C +  C  CL+   G
Sbjct: 66  CSLCETEFTLFRRKHHCRICGKIICKYCLKEAPG 99


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 521 PAPPPPTRSCHNNSHSHVPGQPTSDRLTTSGSRXPGXXPP 640
           P PPPPT    + + S +P  P S  +   GS+     PP
Sbjct: 239 PPPPPPTLPPQSTNTSQLP-MP-SRNVNNLGSQVNIPPPP 276



 Score = 22.6 bits (46), Expect(2) = 1.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 509 SQPYPAPPPP 538
           + P PAPPPP
Sbjct: 232 ADPLPAPPPP 241


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +2

Query: 482 KLDVQPETCSQPYPAPPPPTRSCHNNSHSHVPGQPTSDRLTTSGSRXPGXXPPRSERF 655
           KL +  +     + AP  P RS  ++           + +T + +R  G  PP+ E +
Sbjct: 31  KLSISTDVKKPSHSAPVTPVRSARSSMEQPTFRPVAKNSVTVAPARAAGFCPPQFEEY 88


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 482 KLDVQPETCSQPYPAPPPPTRSCHNNSHSH 571
           K +VQ +  +  YP PPP     H  SH H
Sbjct: 35  KPNVQHQQPTYWYPPPPPRHHKEHKKSHHH 64


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 494  QPETCSQPYPAPPPPTRSCHNNSHSHVPGQPTSDRLTTSGSRXPGXXPPRSE 649
            Q  T S   PAP   T +  + S+   P  P ++ ++   +  P   PP +E
Sbjct: 1053 QATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPAE 1104


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 479 HKLDVQPETCSQPYPAPPPPTRSCHNNSHSHVPGQPTSD-RLT 604
           H+  +   T S P   PPPPTR  H+ S   V     S+ RLT
Sbjct: 33  HESSLTSSTHSHPSNPPPPPTR-LHDRSFKPVSKNYESEGRLT 74


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 CKMPCESCAVQFSVFRHKRVCGECERYYCS 201
           C  P  SC+V+F +F  +  C  C   +C+
Sbjct: 160 CSFP--SCSVRFGLFDRRHHCRRCGDIFCA 187


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 263 TIPSKHRSPQSSRPSVLPTSSKRIHQRM 346
           T  SKH SPQS   SV+  +S  IH+++
Sbjct: 90  TFQSKHHSPQSFSASVI--TSMEIHEQL 115


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 183 TFTTNSFVSKHAELYRTAFARHLAFTSTNKHLSYRYQ 73
           +F T   +  H  L + +FA+H    S +  +  RY+
Sbjct: 450 SFGTGDIIGLHISLPKPSFAQHTTLPSCHDRIPIRYK 486


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/84 (20%), Positives = 33/84 (39%)
 Frame = +3

Query: 258  RPLSRANIAHLKVRDLQCFLHRQNVSTRGCVEKEELVGLCVTHVNSPAYRRRSSRNENSP 437
            R  S  N+ H +   +   +  + +S    +  E+L+ LC T +NS + +     +    
Sbjct: 1951 RGKSILNVLHSRKLSMSSKVDIKALSQSAILITEKLINLCNTRINSKSVKMSLKDHFRLS 2010

Query: 438  FSSLKGLTVNINEFISSTFNLRPA 509
            F     L +    F+  T   + A
Sbjct: 2011 FDDPVDLVIPAKSFLDITLPAKDA 2034


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 112 CKMPCESCAVQFSVFRHKRVCGECERYYCSRCL 210
           CK+  + CA  FSV      C +C++YY   C+
Sbjct: 262 CKVCKKWCAFDFSV-----QCADCKKYYHMDCV 289


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 563 HSHVPGQPTSD-RLTTSGSRXPGXXPPRSERFXTTPGGERTS 685
           +S  PG  TSD  LT      P   P R   F  TP G R S
Sbjct: 131 NSQSPGTDTSDANLTIQSIEAPRRAPQRLSDFF-TPDGRRVS 171


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 131 LSHGILHSRPQTNTYHTDIKRFY 63
           L+H  LH R   N Y TD+K ++
Sbjct: 284 LTHYFLHHRRMPNAYLTDLKTWH 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,505
Number of Sequences: 5004
Number of extensions: 56660
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)