Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0889
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.68 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.6  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 543 VAVTTIVTRTFLGSQPRT 596
           + +TT++T TFLG + RT
Sbjct: 248 LGITTVLTMTFLGLEART 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 515  PYPAPPPPTRSCHNNS 562
            P P PPPP     NNS
Sbjct: 1857 PEPPPPPPRNHDQNNS 1872



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 451  LREL-NGLFSLRELRRRYAGLFTCVTHRPTNSSFSTHPLV 335
            LR+L  G   ++E+ R  AG ++C           TH L+
Sbjct: 1323 LRQLPEGSLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLI 1362



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 451 LRELNGLFSLRELRRRYAGLFTCVTH 374
           +R+++G   +RE R   +G + C+ +
Sbjct: 265 VRQVSGTLIIREARVEDSGKYLCIVN 290



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 521  PAPPPPTRSCHNNSHSHVPGQPTSDRLT 604
            P PPPP    H+ ++S       S+ ++
Sbjct: 1857 PEPPPPPPRNHDQNNSSFNDSKESNEIS 1884


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 500 ETCSQPYPAPPPPTRS 547
           +T  +P P PPPP+ S
Sbjct: 336 DTPPKPAPPPPPPSSS 351


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 172 CGECERYYCSR 204
           C  CER YCSR
Sbjct: 38  CVICERVYCSR 48


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 92  CLFVDVNARCRAKAVRYSSACLDTKEFVVNVRGTTAADASVAVEA 226
           CL    +  C  +    S   + T   VVN   T    A+V +EA
Sbjct: 13  CLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEA 57


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 512  QPYPAPPPPT 541
            QP P PPPP+
Sbjct: 1354 QPPPPPPPPS 1363


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 257 PSTIPSKHRSPQSSRPSVLPTSSK 328
           P   PS H+SPQ+ +    P  S+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQ 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,484
Number of Sequences: 438
Number of extensions: 4676
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)