Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0888
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.25 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.0  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.2  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +3

Query: 78  MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
           +PT   S TP S    TTA+S   T  PL   N +T T  A S+ +S  NS   T
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNSTTAT 466



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 78  MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRT 191
           +PT   S TP S    TTA+S   T  PL   N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 98  SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRN--NXXNCRSTP 265
           ++ KL   L N+I++         SK++ E   KKS+ + N VNK+ +N  N  + R   
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQA 198

Query: 266 TSSGXKA 286
              G KA
Sbjct: 199 REQGSKA 205


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 75  YMPTEPQSPTPNSKTIFTTASSLPITTMP 161
           YMP  P +P PN+  IF   +  P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 110  LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 241
            LE+D  +  ++   + A+  SK I  D+  E+I +  NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 495 LVVXPXRNELPADFXTRLVLAIAVGKSAIVVAVIAQRXSKTVALXHQLNVVXGENKCEL 319
           L + P  +++PAD   ++  +   G   +VVA      S TV   H ++ V     C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTV---HGISYVVDTGYCKL 788


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  VILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDN 157
           V+L LFV  L+   + ++ S L+DD + S  +  Y N
Sbjct: 13  VVLLLFVVFLWLISSFLTSSLLDDDNFFSPFLITYIN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,950
Number of Sequences: 5004
Number of extensions: 27247
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)