Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0888
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 4.2
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 29 4.2
11_06_0232 + 21559467-21559532,21559586-21560200 29 4.2
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 29 4.2
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 27 9.8
03_01_0292 + 2255011-2255564,2256491-2256701,2256792-2256902,225... 27 9.8
02_04_0420 - 22752131-22752553 27 9.8
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGV 260
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 261 -RLPALDXRLXGYR 299
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGV 260
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 261 -RLPALDXRLXGYR 299
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 96 SPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 239
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGV 260
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 261 -RLPALDXRLXGYR 299
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGV 260
PT+ SPT +S + A+S ++ + K R RR+ S +S + T
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADETNVLQ-- 64
Query: 261 RLPALDXRLXGYR 299
R LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>03_01_0292 +
2255011-2255564,2256491-2256701,2256792-2256902,
2257020-2257814
Length = 556
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 546 VXTTPAQNHMXYGGQQRRKVXGPIXLL 626
V + P + H GG++RRKV P+ ++
Sbjct: 71 VESLPEEQHPDVGGEERRKVGVPVYVM 97
>02_04_0420 - 22752131-22752553
Length = 140
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = -2
Query: 564 GPGLFXLTTSNT-----DYAECXHLEVDLVVXPXRNE 469
G G F L +NT DYAEC ++ LV P NE
Sbjct: 76 GKGWFGLWENNTELQAHDYAECFQEQMALVYDPAANE 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,071
Number of Sequences: 37544
Number of extensions: 173801
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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