Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0888
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     29   2.5  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   5.7  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   7.6  

>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 75  YMPTEPQSPTPN--SKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
           Y PT   +PTP+  S T +T+ +S   TT      + ++ T    ++  + T SY +T
Sbjct: 134 YTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTST 191


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 84  TEPQSPTPNSKTIFTTASSLPITTMP--LKKANRSTRTRRAKSSQ 212
           T P  PTP  K   +  +++P+T +P    K  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 78  MPTEPQSPTPNSKTIFT-----TASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
           +PT  ++PTP ++ +FT     TA  +P T        + T  R   + Q+  T    TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240

Query: 243 R 245
           +
Sbjct: 241 K 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,655
Number of Sequences: 59808
Number of extensions: 211250
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)