Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0888
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical pr... 31 0.94
U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical pr... 29 2.2
U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical p... 29 3.8
Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical p... 29 3.8
Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81046-4|CAB02825.1| 278|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 27 8.7
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 27 8.7
>U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical
protein F14D12.1a protein.
Length = 680
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 156 MPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGVRLP 269
+P + + R+ ++ SS + NS +TTR T+ VRLP
Sbjct: 585 LPKQPSQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLP 622
>U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical
protein F14D12.1b protein.
Length = 713
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 156 MPLKKANRSTRTRRAKSSQMS*TNSYETTRXTAGVRLP 269
+P + + R+ ++ SS + NS +TTR T+ VRLP
Sbjct: 585 LPKQPSQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLP 622
>Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical
protein F08G12.1 protein.
Length = 635
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 65 VASLYANGTSVSDSKLEDDLYNSILVADYDNAVE---KSKQIYEDKKSEV 205
+ L N + + S E D Y ADYD +E + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299
>U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical
protein C28G1.3 protein.
Length = 817
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 5 FGTRPDAQKMKTVQVILCLFVASLYANGTSVSD--SKLED--DLYNSILVADYDNAVEKS 172
FG PD M ++ ++ LF+ ++ + G +V+ L++ D YN ILV +Y +
Sbjct: 401 FGGSPDVLMMLKMKKVILLFILTMKSYGYAVAPLYELLQNFRDQYNEILVKEY--CAQFE 458
Query: 173 KQIYEDKKSEVITN 214
+ + +D + + N
Sbjct: 459 RDLEKDNYTPITVN 472
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITT---MPLKKANRSTRTRRAKSSQMS*TNSYETTR 245
PT Q+ TP + TI TT +P TT PL+K N + A S M N T +
Sbjct: 94 PTSTQTTTPTTTTITTT--PVPTTTPYLSPLEKFNEAMNNDGAFKSLMDVINFNSTAK 149
>Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical
protein D1054.9e protein.
Length = 481
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 78 MPTEPQSPTPNSKTIFTTASSLPI----TTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
+PTEP + +S T +T LPI + +A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTT 293
>Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical
protein D1054.9d protein.
Length = 477
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 78 MPTEPQSPTPNSKTIFTTASSLPI----TTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
+PTEP + +S T +T LPI + +A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTT 293
>Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical
protein D1054.9b protein.
Length = 559
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 78 MPTEPQSPTPNSKTIFTTASSLPI----TTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
+PTEP + +S T +T LPI + +A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTT 293
>Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical
protein D1054.9a protein.
Length = 508
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 78 MPTEPQSPTPNSKTIFTTASSLPI----TTMPLKKANRSTRTRRAKSSQMS*TNSYETT 242
+PTEP + +S T +T LPI + +A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTT 293
>Z81046-4|CAB02825.1| 278|Caenorhabditis elegans Hypothetical
protein C37E2.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 81 PTEPQSPTPNSKTIFTTASSLPITTMPLKKAN 176
PT + TP+S + T SSLP T+ L N
Sbjct: 206 PTADNASTPSSSSSITATSSLPTTSSSLSVYN 237
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 PQSPTPNSKTIFTTAS-SLPITTMPLKKANRSTRTR 194
PQ P P +T T +LP TT+P+ N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797
>U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical
protein T10H10.3 protein.
Length = 389
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 74 LYANGTSVSDSKLEDDLYNSILVADYDNAVEK--SKQIYE-DKKSEVITNVVNKLI 232
+YA S D LE DL+N + +Y++ + K +++++ KK E NV+N+ I
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREI 373
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 498 DLVVXPXRNELPADFXTRLVLAIAVGKSAIVVAVIAQRXSKTV 370
+L++ P LP++ TR+ GK +V+A S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 498 DLVVXPXRNELPADFXTRLVLAIAVGKSAIVVAVIAQRXSKTV 370
+L++ P LP++ TR+ GK +V+A S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,918
Number of Sequences: 27780
Number of extensions: 157127
Number of successful extensions: 590
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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