Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0888
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 102 TPNSKTIFTTASSLPITTMPLKKANRSTRT 191
           TP +  I  + +++PIT++P    + ++ T
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 36   KPFKLFCVFSWRLYMPTEPQSP 101
            +P  +F   +   YMP+EP++P
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAP 967


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 168 KANRSTRTRRAKSSQMS*TNSYETTRXTAGVRL 266
           KAN++++ +R KSS      + +T     GV L
Sbjct: 597 KANKASKKKREKSSAKKERKATKTLAIVLGVFL 629


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 399  QQQRWQTCLRRXQGQDESXSQLEVRSSXGEQQGLLQDVNTQRNXYLTLS 545
            QQQ+ Q   ++ Q Q +   Q + +    +QQ   Q    Q+  Y  +S
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVS 1554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,976
Number of Sequences: 438
Number of extensions: 1902
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)