Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0887
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    29   0.70 
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   2.1  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   3.7  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   3.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.9  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.5  

>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 570 KVWVAQNPFMFWVAFIVLIVCLIAMACCPDVRRXAPTNFIFLXHLHGSAELSWFCIS 740
           KV+  + P +F     + IVC+  +     +      N + +  LH    LSWFC S
Sbjct: 99  KVYSNEVPLLFVFVISISIVCIFDLV----IFGCLQYNMVSMDDLHVMQRLSWFCAS 151


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 466 KSIRRAFIRKVYAI 507
           KSIR AF+RKVYAI
Sbjct: 52  KSIRMAFLRKVYAI 65


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 587 KSLHVLGGLHSADSLSHR 640
           K+LH LGGLHS   LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 271 LPARWSLPSRRSVSPGWSIPAGGYA 345
           +P+RW   +   ++P W IP  G++
Sbjct: 358 IPSRWHYSNNERIAPVWMIPDVGWS 382


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 283  WSLPSRRSVSPGWSIPAGGYAPPQPGF 363
            ++ P   ++SPG+ + +  Y+P  PG+
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGY 1565


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 476 AGLSSERCTRSDVSADGDDGFHRSVP 553
           A L+    T  D   DGDD  H SVP
Sbjct: 493 AALNPGYVTSDDFGEDGDDTVHTSVP 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,128
Number of Sequences: 5004
Number of extensions: 58657
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)