Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0887
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0089 + 12265916-12267232 30 2.2
02_03_0185 - 16134426-16134881 30 2.2
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.9
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 29 3.9
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 29 3.9
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 28 6.8
01_05_0372 + 21541220-21541457,21541832-21541912,21542027-215420... 28 6.8
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 28 9.0
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 9.0
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727... 28 9.0
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 9.0
03_04_0105 - 17322276-17322399,17322516-17322740,17323388-173235... 28 9.0
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 524 GDDGFHRSVPVPPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRRETXSSDEL 685
G H + P P + LGG SL GGL S+D+L H + DEL
Sbjct: 330 GGARLHDASPSPSFSEFLGGGISLTDGGGLMSSDALHHHLPTRNDAHHHGGDEL 383
>02_03_0185 - 16134426-16134881
Length = 151
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 288 LTLQEERIPRVEHTRRRICAPSA--WLPTCIWRRR 386
+T R + E RRR C+ A WLP WRRR
Sbjct: 3 MTTARHRSSQAEERRRRRCSERARRWLPPRRWRRR 37
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -2
Query: 707 VKMXQEYEVRRSXASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETHR 528
V++ E E+ HVG A ++ ++ +G + + GH D G V +E T +
Sbjct: 689 VELPVEAELGAGADDHVGVAEEKEASE----DGGADEAAVAGHEDLGTLVGEEGGVWTRK 744
Query: 527 HHQLTHRIAYTFRMK 483
+ ++A R +
Sbjct: 745 KEEQGRKVAANQRQR 759
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -2
Query: 740 ANAKPGKL-CAAVKMXQEYEVRRSXASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGR 564
A A P +L C A+++ EY S H ++ QHY ++ +LG
Sbjct: 364 AKALPKRLNCLAMRLTNEYYSSSSSNKHFPYEEKLEDPKLQHYALFSDN--VLGAAVVVN 421
Query: 563 S-VVQEQSDETHRHHQLTHRIAY 498
S ++ ++ E H H +T ++ Y
Sbjct: 422 STIIHAKTPENHVFHIVTDKLNY 444
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 566 DQSLGGPKSLHVLGGLHSADSLSHRDGVLSRRETXS 673
D++LGG LH L S + L+H V+ RE+ S
Sbjct: 434 DKTLGGQNVLHSLSNARSLELLAHSGEVVLSRESRS 469
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 136 WKN*TRRTNQITRACIRIKADRTLRAGRTRKVDRTRKV 249
W+ ++ NQ+ R+C R+ A R + T+K D ++
Sbjct: 90 WQQQQQQHNQLNRSCSRVLAQRLCKGTDTQKKDAALEI 127
>01_05_0372 +
21541220-21541457,21541832-21541912,21542027-21542092,
21543050-21543178,21544619-21544674,21545451-21545732
Length = 283
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 247 VDQPTGWRLPARWSLPSRRSVSPGWSIP-AGGYAPPQPG 360
+D P + AR +LP RR V PG+S+P P PG
Sbjct: 175 IDGPNEAKTTAR-ALPKRRPVKPGFSLPVVQNDRPTYPG 212
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 146 KLEGPTKLREHVSESRRTVPSGRGVPARW 232
+L+GP LR VSES +TV + + +PA W
Sbjct: 221 RLQGPFSLRM-VSESGQTVIAHQVIPANW 248
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 220 TRKVDRTRKVDQPTGWRLPARWSLPSRRSVSPGWSIPAGGYAPPQPGFQXXXXXXXXXXX 399
++ VD T QP+G+R A SLP + + A + P P +
Sbjct: 1232 SKSVDSTSSTQQPSGYRRAAA-SLPKQEA--------ADSRSTPLPFQRRYPDVEHTTKE 1282
Query: 400 XXXXXNDSVGEDGEVKGFDFTEKSIRRAFIR 492
+SVGED + GFD T K++ A IR
Sbjct: 1283 PRDKPKESVGEDAQ-DGFDET-KALDSAIIR 1311
>09_02_0325 +
7276650-7276770,7276979-7277055,7277146-7277188,
7277276-7277333,7277922-7277991,7278202-7278670,
7278895-7278959
Length = 300
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 545 SVPVPPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRRETXSSDELHIPG 697
S P P ++ G S GG + A RD LSR E + D PG
Sbjct: 179 STPAPTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTPDSNCQPG 229
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 539 HRSVPVPPTDQ----SLGGPKSLHVLGGLHSADSLSHRDGVL 652
H++ P PP DQ SLG S L LH++ S S D +L
Sbjct: 17 HQASPPPPIDQQAAESLGKSPSASDLTALHASSSSSAADALL 58
>03_04_0105 -
17322276-17322399,17322516-17322740,17323388-17323588,
17324705-17324794,17324945-17325059,17325238-17325439
Length = 318
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 18 WLCSSKATKIVFVK*INCEVHCVEV*TSGDCKWNFNKTA-LEKLNSKD 158
W C+ +A+ +F+ + ++H + + DC W F +EK KD
Sbjct: 105 WTCTCRASDSIFIDCYSDDLHYAHIQSLLDCSWWFRVVRDVEKDLKKD 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,487,136
Number of Sequences: 37544
Number of extensions: 446814
Number of successful extensions: 1488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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