Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0887
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   30   2.3  
SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6)                      29   4.0  
SB_20425| Best HMM Match : EGF_CA (HMM E-Value=1.2e-20)                29   5.3  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               28   7.0  
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)          28   7.0  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   9.2  
SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 328 PAGGYAPPQPGF 363
           PAGGY PPQPG+
Sbjct: 54  PAGGYPPPQPGY 65


>SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6)
          Length = 416

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 196 DRTLRAGRTRKVDRTRKVDQPTG 264
           DRTLR G+T  VD+T  VD+  G
Sbjct: 222 DRTLRVGKTLGVDKTLGVDKTLG 244


>SB_20425| Best HMM Match : EGF_CA (HMM E-Value=1.2e-20)
          Length = 144

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 662 HVGTARHRDETDYQHYEGHPEHEGILGHPDFGR 564
           H+  AR+    D   Y GHP+     GH D  R
Sbjct: 102 HLDDARYHGHLDNARYHGHPDDAHYRGHLDNAR 134


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 477 AYRFFSEIETLDFAIFAD*VVRWDIARFTVTC 382
           +YRF S I T   +   D +V+W+++ F ++C
Sbjct: 113 SYRFVSTISTTGHSSI-DSIVQWNVSEFVISC 143


>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
          Length = 466

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 668 ASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGRSV 558
           ASH G  R++   +   + GH E     GH   GR +
Sbjct: 270 ASHTGHIRNKSYVEQASHTGHAEQASHTGHMQNGRHI 306


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 133 LWKN*TRRTNQITRACIRIKADRTLRAGRTRKVDRTRKVDQPTGWRLPAR 282
           +W    +++ Q +RA    +AD     GR R+ ++TR+ D+ +  R P R
Sbjct: 279 VWIGGPKKSLQASRAIQGSRADDWHPRGRRRRENKTRRQDRDSHGRHPGR 328


>SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 251 STLRVRSTLRVRPALRVRSALILIHALVIWLVLRV 147
           S+  VRSTL+   AL VR ALI++     W+ + V
Sbjct: 323 SSRAVRSTLKRDSALAVRVALIIVTDFCCWMPIIV 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,275
Number of Sequences: 59808
Number of extensions: 497977
Number of successful extensions: 3630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)