Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0887
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 49 3e-06
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 34 0.12
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z83218-3|CAB05688.1| 330|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.6
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 4.6
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 4.6
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 4.6
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 6.1
AF408759-1|AAO27838.1| 279|Caenorhabditis elegans LIN-36 protein. 28 6.1
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 6.1
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 28 8.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +3
Query: 525 VTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMACCPDVRRXAPTNFIFLXHL 704
+T F + + P + WV N +++++A IV +V IA++CC ++RR P N I L
Sbjct: 45 ITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILLTIF 104
Query: 705 HGSAELSWFCISA 743
SA + ++A
Sbjct: 105 TLSAAVMTMFVTA 117
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +3
Query: 450 FRFH*KIYTQGFHPKGVRDPMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIV 629
F+F K F K L + + H T V +N ++ ++++ V
Sbjct: 72 FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALYLGSYVIFFV 131
Query: 630 CLIAMACCPDVRRXAPTNFI 689
+++ CC VRR P N I
Sbjct: 132 TYLSLVCCEGVRRKFPVNLI 151
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +3
Query: 450 FRFH*KIYTQGFHPKGVRDPMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIV 629
F+F K F K L + + H T V +N ++ ++++ V
Sbjct: 72 FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALYLGSYVIFFV 131
Query: 630 CLIAMACCPDVRRXAPTNFI 689
+++ CC VRR P N I
Sbjct: 132 TYLSLVCCEGVRRKFPVNLI 151
>Z83218-3|CAB05688.1| 330|Caenorhabditis elegans Hypothetical
protein C31A11.6 protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 507 PMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMACCPDVRRXAPTNF 686
PMC + V M F+ RPT V +F+ +F++LI+C + P + P NF
Sbjct: 99 PMC-VSVLMTMNRFFIVIRPTDQRVFGQRRIFFYSFLILILC-FTLLLIPRL-SYCPVNF 155
Query: 687 I 689
+
Sbjct: 156 L 156
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 240 GTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFP 136
G V++AGTP P GT + R+L G +S P
Sbjct: 651 GNVNVAGTPAPTGTPAVAPAAPRRDLPGAASAATP 685
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 160 NQITRACIRIKADRTLRAGRTRKVDR-TRKVDQPTGWRLPARWSLPSRRSVSPGWS 324
+ ++R+C R D L GR +VD R + P + +P+ + S P +S
Sbjct: 777 DSLSRSCSRANVDAYLGGGRLSRVDSYVRDIHTPYEYEVPSTYDRYRSSSRGPSYS 832
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 160 NQITRACIRIKADRTLRAGRTRKVDR-TRKVDQPTGWRLPARWSLPSRRSVSPGWS 324
+ ++R+C R D L GR +VD R + P + +P+ + S P +S
Sbjct: 727 DSLSRSCSRANVDAYLGGGRLSRVDSYVRDIHTPYEYEVPSTYDRYRSSSRGPSYS 782
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 160 NQITRACIRIKADRTLRAGRTRKVDR-TRKVDQPTGWRLPARWSLPSRRSVSPGWS 324
+ ++R+C R D L GR +VD R + P + +P+ + S P +S
Sbjct: 777 DSLSRSCSRANVDAYLGGGRLSRVDSYVRDIHTPYEYEVPSTYDRYRSSSRGPSYS 832
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 557 PPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRR 661
PPT S GG S V+G + + R VLSRR
Sbjct: 724 PPTSSSPGGIFSQRVMGAVAQEKGPAKRPSVLSRR 758
>AF408759-1|AAO27838.1| 279|Caenorhabditis elegans LIN-36 protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 557 PPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRR 661
PPT S GG S V+G + + R VLSRR
Sbjct: 41 PPTSSSPGGIFSQRVMGAVAQEKGPAKRPSVLSRR 75
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 557 PPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRR 661
PPT S GG S V+G + + R VLSRR
Sbjct: 724 PPTSSSPGGIFSQRVMGAVAQEKGPAKRPSVLSRR 758
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
protein T08G11.1b protein.
Length = 3185
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +2
Query: 362 SNLHMAAQVTVNRAISHRTTQSAKMAKSRVSISLKNLYAGLSSERCTRSDVSADGDDGFH 541
S LH+ ++ I + K+AK RV L N+ G+S +R G
Sbjct: 724 SPLHVLKPTGLDIQIHKSSIDDLKLAKMRVIGDLPNIVIGISDDRLI-------GLMKLG 776
Query: 542 RSVPVPPTDQSLGGPKSLHV 601
S+P P D+ K L V
Sbjct: 777 LSIPTPKADEKTKAEKELEV 796
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
protein T08G11.1a protein.
Length = 3212
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +2
Query: 362 SNLHMAAQVTVNRAISHRTTQSAKMAKSRVSISLKNLYAGLSSERCTRSDVSADGDDGFH 541
S LH+ ++ I + K+AK RV L N+ G+S +R G
Sbjct: 724 SPLHVLKPTGLDIQIHKSSIDDLKLAKMRVIGDLPNIVIGISDDRLI-------GLMKLG 776
Query: 542 RSVPVPPTDQSLGGPKSLHV 601
S+P P D+ K L V
Sbjct: 777 LSIPTPKADEKTKAEKELEV 796
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -2
Query: 683 VRRSXASHV---GTARHRDETDYQHYEGHPEHEGILGHPD-FGRSVVQEQSDETHRHHQL 516
+ ++ A+H T++H + +Y G H G + + + G+ V D+ H H+
Sbjct: 883 INQNQATHYDAYATSQHSNAQEYSTVHGSQTHRGSVVYDEPHGQVVYDIPHDQEHHHYDT 942
Query: 515 TH 510
H
Sbjct: 943 VH 944
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,550
Number of Sequences: 27780
Number of extensions: 355238
Number of successful extensions: 1202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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