Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0887
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 36 0.021
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 1.1
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con... 30 1.4
At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containi... 30 1.9
At1g77400.1 68414.m09013 expressed protein 29 3.3
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil... 28 5.7
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 28 7.5
At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase / galact... 28 7.5
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C... 27 9.9
At4g36970.1 68417.m05239 remorin family protein contains Pfam do... 27 9.9
At4g14730.1 68417.m02265 transmembrane protein-related low simil... 27 9.9
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 27 9.9
At2g20560.1 68415.m02401 DNAJ heat shock family protein SP|Q9UDY... 27 9.9
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 641 RDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQ 519
++E DYQHY+ H H G H F + QS H HHQ
Sbjct: 527 KNEVDYQHYDDHQHHNG--HHHPFDHQM--NQSAHHHHHHQ 563
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 644 HRDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHR 507
H++E +QH + H +HE H D + +E + H HH +H+
Sbjct: 565 HKNEEHHQHSDSH-KHEEHHQHSDSHKH--EEHHEHDHHHHSHSHK 607
>At5g19520.1 68418.m02325 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 742
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 515 SADGDDGFHRSVPVPPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRRETXSS 676
S D D G +S PVPP S+ P+ G +H + +G++ R+ S
Sbjct: 36 SPDSDAGIEKSKPVPPI--SIPTPEIYKFSGSVHKPPKIPSPEGLVRRKSLSRS 87
>At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 548
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 390 R*TGLYPTERLSRRRWRSQGFRFH*KIYTQGF 485
R T + + S+ WRS GF FH K+ GF
Sbjct: 112 RYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF 143
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 283 WSLPSRRSVSPGWSIPAGGYA 345
W++ SRRSVSP W P ++
Sbjct: 192 WTVSSRRSVSPRWESPKSSFS 212
>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
to MURA transposase of maize Mutator transposon
Length = 637
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 465 KIYTQGFHPKGVRDPMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 644
+I TQ ++ + + ++ G + + L+ T +W+ Q ++F FIV I+ +I
Sbjct: 484 QIPTQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFIILIITC 543
Query: 645 A 647
A
Sbjct: 544 A 544
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 286 SLPSRRSVSPGWSIPAGGYAPPQPGF 363
S P SPG+S + GY+P PG+
Sbjct: 1548 SSPGYSPTSPGYSPTSPGYSPTSPGY 1573
>At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase /
galactoside 3(4)-L-fucosyltransferase (FUT13) (FucTC)
identical to SP|Q9C8W3 Alpha-(1,4)-fucosyltransferase
(EC 2.4.1.-) (FT4-M) (Galactoside 3(4)-
L-fucosyltransferase) (FucTC) (AtFUT13) {Arabidopsis
thaliana}; identical to cDNA alpha1,3-fucosyltransferase
homologue (FucTC) GI:13992485
Length = 401
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 458 SLKNLYAGLSSERC--TRSDVSADGDDGFHRSVPVPPTDQSLGGPKSLHV 601
+L+NLY+ C T+S V AD D PP + +G P +++
Sbjct: 117 NLENLYSCRCGMTCLWTKSSVLADSPDALLFETTTPPLQRRVGDPLRVYM 166
>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase 2C (GI:10432446)
[Nicotiana tabacum]
Length = 416
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 648 CCPDVRRXAPTNFIFLXHLHGSAELSWFC 734
C P+V R P +F + HG +++S C
Sbjct: 132 CKPEVNRQRPVHFFAVYDGHGGSQVSTLC 160
>At4g36970.1 68417.m05239 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 427
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 170 REHV-SESRRTVP--SGRGVPARWTVPARW 250
R H+ S S T P SGR +P++W RW
Sbjct: 49 RRHIGSSSALTTPFYSGRAIPSKWEDAERW 78
>At4g14730.1 68417.m02265 transmembrane protein-related low
similarity to transmembrane protein OTMP [Ovis aries]
GI:9965379
Length = 235
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 516 QLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMACCPDVRRXAPTNFIFL 695
QL+VT+G A+ + RP ++ + V F++L++ L+ + + P N I L
Sbjct: 39 QLLVTVGVSAVVYFVRPIPEFITETHRGLAVFFVILLLPLLLLWPLLAFEKKHPINCIVL 98
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 605 PEHEGILGHPDFGRSVVQEQS 543
PE+ +L PDFGR + EQS
Sbjct: 225 PENVEVLAEPDFGREGLDEQS 245
>At2g20560.1 68415.m02401 DNAJ heat shock family protein SP|Q9UDY4
DnaJ homolog subfamily B member 4 (Heat shock 40 kDa
protein 1 homolog) {Homo sapiens}; contains Pfam profile
PF00226: DnaJ domain
Length = 337
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 181 IRIKADRTLRAGRTRKVDRTRKVDQPTGWRLPARWSLPSRRSVSPGWSIPA 333
+RI + +G+T +V+ +D GW+ + + P + + PG IPA
Sbjct: 182 MRISREIADVSGKTMQVEEILTIDVKPGWKKGTKITFPEKGNEQPG-VIPA 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,692
Number of Sequences: 28952
Number of extensions: 333800
Number of successful extensions: 1071
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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