Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0886
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro...    29   3.9  
At4g33985.1 68417.m04822 expressed protein                             29   3.9  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   3.9  
At3g51310.1 68416.m05616 vacuolar protein sorting-associated pro...    28   6.9  
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co...    28   6.9  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    27   9.1  
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ...    27   9.1  

>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 240

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 231 VPDQRPVLCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHR--FDAWYGWK--NH 398
           +P ++ V  S+  S  + C V   D     I    +C   + K HR   DAW+  K  N 
Sbjct: 56  IPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQ 115

Query: 399 CQ 404
           C+
Sbjct: 116 CE 117


>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
           P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
          Length = 499

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -3

Query: 392 LPTVPGIEAVTFVNFLSAFRCLSNVVSQE--VGALNV--AVFAWTGAFAAQYRSLIWNNP 225
           LP +  I + T   + +A   L +V S++  VG  ++       T A+A     L+W++P
Sbjct: 348 LPYLQNIVSETLRLYPAAPMLLPHVASKDCKVGGYDMPRGTMLLTNAWAIHRDPLLWDDP 407

Query: 224 *SFEPLRF 201
            SF+P RF
Sbjct: 408 TSFKPERF 415


>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  HEMXSRA*AEETWLRRKSHEELGMSGRAR 170
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 161 TRHTQFLMRFSSKPCFLS---SCTRXHLVNVLASEPTQRTTKAKIINFCISIVSFE 3
           TR+   L + SSK    S   S    HLVNV   E + R ++  I   C S VSFE
Sbjct: 6   TRNMMTLSKRSSKTKTGSVWFSYLEEHLVNVHIFEESPRDSRDAICKLCKSTVSFE 61


>At3g51310.1 68416.m05616 vacuolar protein sorting-associated
           protein 35 family protein / VPS35 family protein similar
           to vacuolar protein sorting 35 [Mus musculus]
           GI:11875394; contains Pfam profile PF03635: Vacuolar
           protein sorting-associated protein 35
          Length = 783

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 553 GRCSNYIQISLNFYLKTRTKHTGLFRGDRIESLAEVHSGI*QLLISGKEPW 401
           G  S Y+++ LN YL    K      GD I+SLAE+     + + SG EP+
Sbjct: 702 GSVSLYVEL-LNKYLYFLEKGNQQVTGDTIKSLAELIKSETKKVESGAEPF 751


>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
           contains Pfam profile PF04885: Stigma-specific protein,
           Stig1
          Length = 121

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 GLRIVPDQRPVLCSKGASPGKD-CNVKCSDLLTDDITKAAKCAK 347
           G  +  D+   +C    SPG++ C  KC DL T+ +    +C K
Sbjct: 44  GATLTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKL-NCGRCGK 86


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 357 KRHRFDAWYGWKNHCQGSLPDISS 428
           + HR + +Y WK  C+  +P + S
Sbjct: 100 RNHRREQYYAWKEECKNMVPLVGS 123


>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 580

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 319 SSVRRSEHLTLQSLPGLAPLLHSTG 245
           S+V +S   +L+ +PGL+PL +S+G
Sbjct: 321 SAVAQSPFSSLEMMPGLSPLAYSSG 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,210
Number of Sequences: 28952
Number of extensions: 237571
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)