Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0884
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    30   0.38 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.2  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 609 ARKIRGRPENAGPXPVRNVRRFSRV 535
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 SGCCRCRVWSMFVRYVRFSELVF*YNXAQKLYIF 527
           +GC +  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 205 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSXHFGLPRRT 68
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 280 TGATSPRTSSPEFSRSAESIRTPPQMRCSS--RSEPYLPSIGF 158
           + ++S  +SSP   RS+   +TPP     S   + P+ P +GF
Sbjct: 3   SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGF 45


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 623  RHDLRLG-RSAEGRRTRVRXQSET*DDFRECHIKYIQFLSRIILKY*LAKTNITHE 459
            + D +LG + A   + +V   S+  D  +E H+KY+Q   +  L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,611
Number of Sequences: 5004
Number of extensions: 55469
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)