Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0884
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    30   1.6  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    29   4.9  
11_05_0087 + 18970741-18972702                                         28   6.5  
07_03_0078 - 13147741-13148913                                         28   6.5  
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628     28   8.6  
03_05_0565 + 25667391-25667696                                         28   8.6  

>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -3

Query: 256 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSXHFG 83
           S  E SR++  + I+  P M  S   +  +   GFHG   L+   KL PDL +    HF 
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231

Query: 82  LPRRTLVFKDEGTI 41
                LVF   G I
Sbjct: 232 PATNQLVFPGRGAI 245


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 303 TCCGYGYEPARHLHVHPHLNFQGP 232
           +CCG+     R+  + PHLN  GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 144 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 263
           VR P  P+ GR+G  RE  R    +    +   + G+ VR
Sbjct: 56  VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 569 SGPAFSGLPRIFLAVSRVGFVSCAI 643
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
          Length = 132

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 319 ALHLGXLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 179
           A H G    I VRT   +  TS       A SI TP  + CS+ + P
Sbjct: 38  ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84


>03_05_0565 + 25667391-25667696
          Length = 101

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 295 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 149
           RI++   A  PR  SP  +R A++         S+ +EP  P    HGT
Sbjct: 40  RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,767,378
Number of Sequences: 37544
Number of extensions: 410079
Number of successful extensions: 1296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)