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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0882
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   5e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              76   2e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           64   4e-11
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.092
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   0.86 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.1  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    29   2.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +1

Query: 85  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 201
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 23 MGKXSFKYAWVLDKLKAER 79
          MGK SFKYAWVLDKLKAER
Sbjct: 1  MGKGSFKYAWVLDKLKAER 19


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +1

Query: 94  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 267 GQTREHALLAFTLGVKQLIVGXNKMD 344
           GQTREHA+L  +LGV QLIV  NK+D
Sbjct: 59  GQTREHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 26/57 (45%), Positives = 39/57 (68%)
 Frame = +1

Query: 85  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL++ A  GEFE G
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETG 263



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/57 (47%), Positives = 39/57 (68%)
 Frame = +3

Query: 261 KNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIGXNP 431
           + GQTREHA+LA T GVK L++  NKMD     ++  R+E IK ++  ++KK+G NP
Sbjct: 266 RGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 85  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 136 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
           +T ID PGH  F      G +  D  VL+V A  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 85  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 231
           GIT  I  +  +     +  +D PGH  F      G    D  +++V A
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 142 IIDAPGHRDFIKNMITGTSQADCAVLIV 225
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 130 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,861
Number of Sequences: 59808
Number of extensions: 221294
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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