Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0882
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 117 4e-27
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 117 4e-27
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 117 4e-27
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 100 5e-22
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 70 1e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 56 1e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 56 1e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 56 1e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 56 1e-08
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 56 1e-08
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 48 3e-06
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.012
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 31 0.33
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.43
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.43
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.57
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 0.76
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 30 1.00
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.00
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 1.7
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 29 1.7
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 27 9.3
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 9.3
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 27 9.3
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 9.3
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 117 bits (282), Expect = 4e-27
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGEFEAG
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 5 EKEAQEMGKXSFKYAWVLDKLKAER 79
EKEAQEMGK SFKYAWVLDKLKAER
Sbjct: 43 EKEAQEMGKGSFKYAWVLDKLKAER 67
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = +3
Query: 255 ISKNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKK 392
ISKNGQTREHALLA TLGVKQL+ + T P S R + I++
Sbjct: 127 ISKNGQTREHALLAQTLGVKQLV---SLRSPTRSPDSSRRSDTIQR 169
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 117 bits (282), Expect = 4e-27
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGEFEAG
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
Score = 97.5 bits (232), Expect = 4e-21
Identities = 48/64 (75%), Positives = 50/64 (78%)
Frame = +3
Query: 255 ISKNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIGXNPA 434
ISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+S RF I EV +IKKIG NP
Sbjct: 127 ISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPK 186
Query: 435 AVAF 446
AV F
Sbjct: 187 AVPF 190
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 5 EKEAQEMGKXSFKYAWVLDKLKAER 79
EKEAQEMGK SFKYAWVLDKLKAER
Sbjct: 43 EKEAQEMGKGSFKYAWVLDKLKAER 67
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 117 bits (282), Expect = 4e-27
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGEFEAG
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
Score = 97.5 bits (232), Expect = 4e-21
Identities = 48/64 (75%), Positives = 50/64 (78%)
Frame = +3
Query: 255 ISKNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIGXNPA 434
ISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+S RF I EV +IKKIG NP
Sbjct: 127 ISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPK 186
Query: 435 AVAF 446
AV F
Sbjct: 187 AVPF 190
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 5 EKEAQEMGKXSFKYAWVLDKLKAER 79
EKEAQEMGK SFKYAWVLDKLKAER
Sbjct: 43 EKEAQEMGKGSFKYAWVLDKLKAER 67
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 100 bits (240), Expect = 5e-22
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 225
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +3
Query: 318 LIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIGXNPAAVAF 446
L+V NKMDSTEPP+S RF I EV +IKKIG NP AV F
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
Score = 53.6 bits (123), Expect = 7e-08
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 5 EKEAQEMGKXSFKYAWVLDKLKAER 79
EKEAQEMGK SFKYAWVLDKLKAER
Sbjct: 43 EKEAQEMGKGSFKYAWVLDKLKAER 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETG 289
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3
Query: 267 GQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKK 416
GQT+EHALL +LGV QLIV NK+D+ + +S RF+ IK + ++ +
Sbjct: 294 GQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 341
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 11 EAQEMGKXSFKYAWVLDKLKAER 79
EA GK SF YAWVLD+ + ER
Sbjct: 208 EAARNGKASFAYAWVLDETEEER 230
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETG 307
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3
Query: 267 GQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKK 416
GQT+EHALL +LGV QLIV NK+D+ + +S RF+ IK + ++ +
Sbjct: 312 GQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 359
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 11 EAQEMGKXSFKYAWVLDKLKAER 79
EA GK SF YAWVLD+ + ER
Sbjct: 226 EAARNGKASFAYAWVLDETEEER 248
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 255
G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL++ A GEFE G
Sbjct: 172 GKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETG 228
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 261 KNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIGXNP 431
+ GQTREH++L T GVK L++ NKMD + RF+ I+ ++ +++K+G NP
Sbjct: 231 RGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 148
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 270 QTREHALLAFTLGV--KQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIG 422
QTREH LLA +GV ++V NK+D E P + R E ++ ++ + + G
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 201
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 270 QTREHALLAFTLGV--KQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIG 422
QTREH LLA +GV ++V NK+D E P + R E ++ ++ + + G
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 202
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 270 QTREHALLAFTLGV--KQLIVGXNKMDSTEPPYSXPRFEXIKKEVXSYIKKIG 422
QTREH LLA +GV ++V NK+D E P + R E ++ ++ + + G
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 202
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/55 (50%), Positives = 35/55 (63%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFE 249
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 270 QTREHALLAFTLGVKQLIVGXNKMDSTE 353
QT+EH +LA +GVK + + NK D E
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/55 (50%), Positives = 35/55 (63%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFE 249
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 270 QTREHALLAFTLGVKQLIVGXNKMDSTE 353
QT+EH +LA +GVK + + NK D E
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE 175
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 5 EKEAQEMGKXSFKYAWVLDKLKAER 79
EKEAQEMGK SFKYAWVLDKLK +
Sbjct: 43 EKEAQEMGKGSFKYAWVLDKLKVTK 67
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 85 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA--GTGEFEAG 255
GIT I + E +K VT +D PGH F G AD VL+V A G E A
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQ 247
Query: 256 SLRTVK 273
S++ K
Sbjct: 248 SIKFAK 253
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GIT+ Y + +ID PGH DF + + D +L+V A G
Sbjct: 87 GITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 94 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 94 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.7 bits (66), Expect = 0.57
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 91 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 91 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 29.9 bits (64), Expect = 1.00
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GITI A + + IID PGH DF + D AVL++ G G
Sbjct: 97 GITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.00
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 142 IIDAPGHRDFIKNMITGTSQADCAVLIV 225
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 133 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 225
+V+ +D PGH + M+ G + D A L+V
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLV 158
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 85 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
GIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 75 GITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 136 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 240
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 136 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 225
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 136 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 225
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 136 VTIIDAPGHRDFI--KNMITGTSQA 204
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VEKEAQEMGKXSFKYAWVLDKLKAERXVVSQSILLS 109
++K +EM K +Y L++L+ E V+ Q +LLS
Sbjct: 213 IQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 341 HFVXSYDELFDTEGESEQGMLTGLTVLRDPASNSPVPAXTMSTAQSA 201
HF +DE+ E +E T RDP +P T+ST+ SA
Sbjct: 600 HFGMVFDEIRRKEIPAELDSETSSIDSRDPFGAAPFDQLTVSTSSSA 646
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 341 HFVXSYDELFDTEGESEQGMLTGLTVLRDPASNSPVPAXTMSTAQSA 201
HF +DE+ E +E T RDP +P T+ST+ SA
Sbjct: 600 HFGMVFDEIRRKEIPAELDSETSSIDSRDPFGAAPFDQLTVSTSSSA 646
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 341 HFVXSYDELFDTEGESEQGMLTGLTVLRDPASNSPVPAXTMSTAQSA 201
HF +DE+ E +E T RDP +P T+ST+ SA
Sbjct: 600 HFGMVFDEIRRKEIPAELDSETSSIDSRDPFGAAPFDQLTVSTSSSA 646
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 341 HFVXSYDELFDTEGESEQGMLTGLTVLRDPASNSPVPAXTMSTAQSA 201
HF +DE+ E +E T RDP +P T+ST+ SA
Sbjct: 600 HFGMVFDEIRRKEIPAELDSETSSIDSRDPFGAAPFDQLTVSTSSSA 646
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,198
Number of Sequences: 27780
Number of extensions: 169040
Number of successful extensions: 408
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -