Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0879
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 136 4e-33
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 135 5e-33
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 135 5e-33
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 89 8e-19
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 79 8e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 55 1e-08
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 30 0.38
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 2.0
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 4.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 136 bits (328), Expect = 4e-33
Identities = 65/88 (73%), Positives = 77/88 (87%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 421
F + +ITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 98 FIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Query: 422 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 505
T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 158 T--GWSQARFEEIVKETSNFIKKVGFNP 183
Score = 108 bits (260), Expect = 7e-25
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 156
SGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERE
Sbjct: 18 SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 94.3 bits (224), Expect = 2e-20
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +1
Query: 502 PSSVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCXIEALDAILXPARPTXK 681
P +V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK +EA+D+I PARPT K
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 682 PLRL 693
PLRL
Sbjct: 243 PLRL 246
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GITIDIALWKFET KY VT+IDAPGHRDFIKN
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKN 101
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 135 bits (327), Expect = 5e-33
Identities = 64/88 (72%), Positives = 77/88 (87%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 421
F + +ITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 98 FIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Query: 422 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 505
T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 158 T--GWSQARFEEIVKETSNFIKKVGFNP 183
Score = 108 bits (260), Expect = 7e-25
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 156
SGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERE
Sbjct: 18 SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 94.3 bits (224), Expect = 2e-20
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +1
Query: 502 PSSVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCXIEALDAILXPARPTXK 681
P +V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK +EA+D+I PARPT K
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 682 PLRL 693
PLRL
Sbjct: 243 PLRL 246
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GITIDIALWKFET KY VT+IDAPGHRDFIKN
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKN 101
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 135 bits (327), Expect = 5e-33
Identities = 64/88 (72%), Positives = 77/88 (87%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 421
F + +ITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 98 FIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Query: 422 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 505
T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 158 T--GWSQARFEEIVKETSNFIKKVGFNP 183
Score = 108 bits (260), Expect = 7e-25
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 156
SGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERE
Sbjct: 18 SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 94.3 bits (224), Expect = 2e-20
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +1
Query: 502 PSSVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCXIEALDAILXPARPTXK 681
P +V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK +EA+D+I PARPT K
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 682 PLRL 693
PLRL
Sbjct: 243 PLRL 246
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GITIDIALWKFET KY VT+IDAPGHRDFIKN
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKN 101
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 88.6 bits (210), Expect = 8e-19
Identities = 40/84 (47%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 LITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 433
+I G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD
Sbjct: 333 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 392
Query: 434 YSEPRFEEIKKEVSSYIKKI-GYN 502
+SE R++E ++S +++++ GYN
Sbjct: 393 WSEERYKECVDKLSMFLRRVAGYN 416
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 156
+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE
Sbjct: 249 AGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
G T+++ FET +++DAPGH+ ++ N
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTN 332
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 78.6 bits (185), Expect = 8e-16
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 421
F +I G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D
Sbjct: 268 FISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327
Query: 422 TEPPYSEPRFEEIKKEVSSY-IKKIGY 499
+SE RF+EIK VS + IK +G+
Sbjct: 328 MS--WSEDRFQEIKNIVSDFLIKMVGF 352
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 153
SGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 188 SGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFI 248
G+T+D+A FE+ K I DAPGHRDFI
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFI 269
Score = 35.1 bits (77), Expect = 0.010
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 505 SSVAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCXIEALDAILXPARPTX 678
S+V FVPIS G N+++ + W+KG + ALD ++ P +P
Sbjct: 355 SNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPPEKPYR 402
Query: 679 KPLRLS 696
KPLRLS
Sbjct: 403 KPLRLS 408
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +2
Query: 215 HH*CSWTQRFHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 394
H C + + +ITG + D A+++V+A G+ QTREH LLA +GVKQ+
Sbjct: 120 HVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQI 172
Query: 395 IVGVNKMDSTEPPYSEPRFEEIKKEVSSY 481
+V +NK+D EP E E+++ +S Y
Sbjct: 173 VVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GITI A ++ET+ + +D PGH D+IKN
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKN 132
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDF 245
GITI+ A F + +ID PGH DF
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADF 106
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +2
Query: 254 LITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 433
++ G + D A+L++A QT EH + +K +I+ NK+D
Sbjct: 125 MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIILQNKVDLIRES 178
Query: 434 YSEPRFEEIKKEVSSYI 484
+E ++ I K + +
Sbjct: 179 AAEEHYQSILKFIKGTV 195
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 162 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 254
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 189 FETSKYYVTIIDAPGHRDF 245
FE S Y + IID PGH DF
Sbjct: 141 FEKS-YNINIIDTPGHIDF 158
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 139 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 11
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,006
Number of Sequences: 5004
Number of extensions: 62653
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -