Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0879
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 8e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 77 1e-14
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 71 1e-12
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 67 2e-11
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.6
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 2.8
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) 29 4.9
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11) 28 8.6
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 8.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (241), Expect = 8e-22
Identities = 44/88 (50%), Positives = 64/88 (72%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 421
F +I+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L++ VNKMD
Sbjct: 235 FVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDD 294
Query: 422 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 505
++E R+EEIK +++ ++KK+G+NP
Sbjct: 295 PTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 37 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 156
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 35.1 bits (77), Expect = 0.057
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
G T+++ F+T + T++DAPGH+ F+ N
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPN 238
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +2
Query: 242 FHQELITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 418
F +ITG +QAD A+L+V A TGEFEAG GQTREHA+L +LGV QLIV +NK+D
Sbjct: 26 FIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 168 IDIALWKFETSKYYVTIIDAPGHRDFIKN 254
+D+ L +F+T +T++DAPGH+DFI N
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPN 29
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GITIDIALWKFET KYYVT+IDAPGHRDFIKN
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKN 53
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Frame = +1
Query: 547 NMLEPSTKMPWFKGWQVER------KEGKADGKCXIEALDAILXPARPTXKPLRL 693
NM+ +++MPWFK W +ER KE A G E LD+IL P+RP+ PLRL
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRL 107
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 97 MGKGSFKYAWVLDKLKAERE 156
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +1
Query: 4 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 99
SGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 18 SGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -2
Query: 483 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 331
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 330 IPASNSPVPAAT 295
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/100 (21%), Positives = 43/100 (43%)
Frame = +2
Query: 254 LITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 433
++ G + D A+L++A QT EH + +K +++ NK+D +
Sbjct: 81 MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134
Query: 434 YSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTC 553
++ ++++I K V I + P + +S E C
Sbjct: 135 QAKDQYDQILKFVQGTIAEGA--PVIPISAQLKYNIEVIC 172
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = -2
Query: 600 LHLPSLEPRHFGXRLQHVVSVPSRNGHESDRAGL*PIFLMYEDTSFLISSNLGSLYGGSV 421
+H+ P G R+ H V+ S G + + P +M + ++ + +GG
Sbjct: 420 IHIGPYGPPPSGIRVSHAVTTASAQGAAATATVMNPAIIMDQTRYIALTQQAAAGFGGLA 479
Query: 420 ESILF--TPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTAQSA 274
+ + P S + S + P L +P ++S +P + ++ +A
Sbjct: 480 TNCMAGDVPGSSSMMDVTTPSSGIYSM-PVLGVPPASSGIPVSISTSNPNA 529
>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
Length = 250
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 52 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXVSQSI--LLSGSSKLASTMLPSLM 225
IDK T K+EK+ E K K A++ DK + + V +I L + L + +LP+ +
Sbjct: 81 IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138
Query: 226 LLDTEISSRTDHRNL 270
D E + + + L
Sbjct: 139 NKDVESTRKAQNDKL 153
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 535 WHGDNMLEPSTKMPWFKGWQVERKE 609
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 137 N*RLSVXRYHNRYCSLEVRN 196
N +L + RYH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 290 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 466
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 467 EVSS 478
S
Sbjct: 425 RTVS 428
>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
Length = 1552
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 398 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCP 526
+ V+ +DS PP P ++I +E+ +++ +PA +L P
Sbjct: 1231 IEVDGIDSPSPPPPPPEEDDISEELVDEVQEFPVSPAETLPSP 1273
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 159 GITIDIALWKFETSKYYVTIIDAPGHRDFIKN 254
GI++ ++ F + I+D PGH+DF ++
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAED 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,615,559
Number of Sequences: 59808
Number of extensions: 480982
Number of successful extensions: 1289
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -