Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0878
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 139 2e-33
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 48 8e-06
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 46 2e-05
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 43 3e-04
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23) 41 0.001
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 40 0.002
SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022) 38 0.006
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 36 0.034
SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11) 36 0.034
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 36 0.046
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 35 0.060
SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08) 34 0.11
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 34 0.11
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 34 0.14
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08) 33 0.24
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 33 0.24
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 31 0.98
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 30 2.3
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 29 4.0
SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08) 29 5.2
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2) 28 9.1
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 139 bits (337), Expect = 2e-33
Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Frame = +1
Query: 262 FGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMT 441
FGRID+++NNAGILRDKS +M+E DWDL+Q VHLKG+F T AAW +KQK+GRI+MT
Sbjct: 91 FGRIDVVVNNAGILRDKSILRMSELDWDLVQRVHLKGSFLVTRAAWPHMKKQKFGRIIMT 150
Query: 442 SSNAGLFGNFGQANYSAAKLGLVA*PTHWPLKAQNTISR*TQLFP--RRRLVSLKISSRQ 615
+S +G++GNFGQANYSAAKLGLV + + + P RL +S
Sbjct: 151 TSTSGIYGNFGQANYSAAKLGLVGLSNTLAQEGAKYNIKCNAIAPVAGSRLTKTVMSDEM 210
Query: 616 -RCMRP*SRN*LLPVVAYMVHESFNDTGAIIDFHIGG-SQTK 735
++P + P+V Y+ HES + + + +G SQT+
Sbjct: 211 IEALKP---EYIAPLVLYLCHESCEENAGLFETAVGWFSQTR 249
Score = 82.6 bits (195), Expect = 3e-16
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 5 DQLRFDGRVAVVTXXXXXXXXXXXXXXXSRGAKVVVNDLGSARXGAGKSN-AADAVVKEI 181
+ +RFDGRV +VT RGA VVVNDLG G GKS AAD VV+EI
Sbjct: 4 EPIRFDGRVVLVTGAGNGLGRQYALAFAERGASVVVNDLGGDTKGEGKSGRAADKVVQEI 63
Query: 182 KDKGGVAVADYNSVVEGEKLIKTAMIILG 268
+ KGG AVADYNSV +G+++++TA+ G
Sbjct: 64 RAKGGKAVADYNSVEQGDQVVETAIKAFG 92
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +3
Query: 510 GLANTLAIEGAKYNIKVNTIVPTAASRLTEDILPPEMYEAMKPELIAP 653
GL+NTLA EGAKYNIK N I P A SRLT+ ++ EM EA+KPE IAP
Sbjct: 174 GLSNTLAQEGAKYNIKCNAIAPVAGSRLTKTVMSDEMIEALKPEYIAP 221
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 48.0 bits (109), Expect = 8e-06
Identities = 29/82 (35%), Positives = 39/82 (47%)
Frame = +1
Query: 265 GRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTS 444
G +DIL+NNAGIL K T+ ++L F T+ + +Q G IV S
Sbjct: 1298 GDVDILVNNAGILHGKRLLDQTDAQIQKAIELNLLAHFWTSRSFLGRMLEQNQGHIVTIS 1357
Query: 445 SNAGLFGNFGQANYSAAKLGLV 510
S +G F Q Y A+K G V
Sbjct: 1358 SVSGSFPTAFQVEYCASKYGAV 1379
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 223 RRGGEANKNGN---DNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHA 393
R+ E K N D G + ILINNAG++ K F +E D V+ T
Sbjct: 94 RKKDEVEKVANAVEDQAGNVTILINNAGVVTGKKFLNCSESDVMRTFQVNSLAHIWTIQR 153
Query: 394 AWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLV 510
+ ++ G IV +S AG FG G +Y A+K V
Sbjct: 154 FIPSMMEKNRGHIVSIASVAGYFGLVGCVDYCASKFAAV 192
>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 235 EANKNGNDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRK 414
EA K R+D+L N AG++ + + +E+ WDL +++K F+ T R+
Sbjct: 73 EAIKKFASEVDRVDVLFNCAGLVLGGNIEECSEKQWDLTMDLNVKSMFRMTKECIPKMRQ 132
Query: 415 QKYGRIV-MTSSNAGLFGNFGQANYSAAKLGLV 510
Q G I+ M S + + G + Y +K ++
Sbjct: 133 QGSGSIINMASVASSIKGAPNRFAYGTSKAAVI 165
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 265 GRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTH-AAWETFRKQKYGRIVMT 441
GRID+L+NNAG + F M +W I V + GAF + AA + ++ + GRI+
Sbjct: 115 GRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINI 174
Query: 442 SS 447
+S
Sbjct: 175 TS 176
>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
Length = 228
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 NFGRIDILINNAGILRDKS-FTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIV 435
+FG D ++NNAG + + ++T +++D + V+LKG+ + K G IV
Sbjct: 76 SFGPPDFVLNNAGFVNQNAPLWEITAEEFDKVVDVNLKGSANVIRSFLPKMIKAGKGVIV 135
Query: 436 MTSSNAGLFGNFGQANYSAAKLGL 507
SS G G A Y A K G+
Sbjct: 136 NFSSGYGKAGKAKMAPYCATKWGI 159
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +1
Query: 253 NDNFGRIDILINNAGILRDK-SFTKMTEQDWDLIQAVHLKGAFKTTHAA---WETFRKQK 420
+ +FGR+D+L+NNAGIL + +M W + A ++ G+F A T +
Sbjct: 80 DQHFGRLDVLVNNAGILETQMRLEQMELARWQRVFATNVFGSFLCCREAIKRMSTRQGGN 139
Query: 421 YGRIVMTSSNAGLFGNFGQ-ANYSAAK 498
G IV SS A G G+ +Y+A K
Sbjct: 140 GGAIVNLSSAAARLGAPGEYIDYAAVK 166
>SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022)
Length = 233
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 280 LINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGL 459
L+NNAG+ MT +++ I V+L G + T A +++K GR+V SS AG+
Sbjct: 41 LVNNAGVFIPGPVEWMTVEEYKQIAEVNLWGTVRMTKAFLPLLKREK-GRVVNISSVAGM 99
Query: 460 FGNFGQANYSAAKLGL 507
+ Y +K G+
Sbjct: 100 VPLQRSSAYCISKFGV 115
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +1
Query: 265 GRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTS 444
GRID+L+NNAGI T + + ++ G + T+A +KQ+ G +V
Sbjct: 114 GRIDVLVNNAGIGLFCVPECATTDAINKVFEPNVYGLMRMTNAVIPHMKKQRAGHVVNIG 173
Query: 445 SNAGLFGNFGQANYSAAKLGL 507
S G+ G Y A+K +
Sbjct: 174 SVLGIVGTPFSEIYCASKFAV 194
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 35.9 bits (79), Expect = 0.034
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 DNFGRIDILINNAGILRDKSFTKMTEQDWDLIQA---VHLKGAFKTTHAAWETFRKQKYG 426
D+F +IDILINN+G R + + ++ +A ++ T A ++K G
Sbjct: 125 DHFNKIDILINNSG--RSQRGLAVETPGIEVEKAMLDLNFLAVVSLTKAVLPHMIERKNG 182
Query: 427 RIVMTSSNAGLFGNFGQANYSAAKLGL 507
IV+TSS AG G +Y+A K +
Sbjct: 183 HIVVTSSVAGKIGAPMSTSYNATKFAV 209
>SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)
Length = 305
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Frame = +1
Query: 265 GRIDILINNAGILRDKSFTKMTEQDWDLIQAV----------------HLKGAFKTTHAA 396
G + IL+NNAGI+ K F + +DW + + + ++ +T +
Sbjct: 129 GEVTILVNNAGIVSGKKF--LDTEDWMIQKTMEVNTMAHFWILALNPDYIVFTLQTVKSF 186
Query: 397 WETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLV 510
+ + +G +V +S+AG FG G +Y ++K G V
Sbjct: 187 LPSMLAKNHGHVVNIASSAGFFGVPGMCDYCSSKFGAV 224
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 35.5 bits (78), Expect = 0.046
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Frame = +1
Query: 253 NDNFGRIDILINNAGI-LRDKSFTKMTEQD----WDLIQAVHLKGAFKTTHAAWETFRKQ 417
N+ FG ++ +N AGI + K+ +K E ++ + V+ G+F E K
Sbjct: 86 NEKFGPLNAAVNCAGIGIAVKTLSKTGEAHALDLFEKVLKVNTTGSFNVIRLVAEQMIKN 145
Query: 418 K------YGRIVMTSSNAGLFGNFGQANYSAAKLGLV 510
+ G I T+S A G GQA YSA+K G+V
Sbjct: 146 EPTEGGERGVITNTASVAAFDGQMGQAAYSASKGGIV 182
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 35.1 bits (77), Expect = 0.060
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +1
Query: 280 LINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGL 459
++NNAGI F +T Q + V++ G T A +K GRIV +S AG
Sbjct: 628 IVNNAGIGSGGPFDWITVQQMQRVFDVNVWGLLNVTKAFLPLLKKS-CGRIVNVASCAGK 686
Query: 460 FGNFGQANYSAAK 498
G + YSA+K
Sbjct: 687 LPGPGLSAYSASK 699
>SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)
Length = 272
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 262 FGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIV 435
FG++D+L+NNA + E+ W+ + V+L F + AA+ K+ +G I+
Sbjct: 91 FGQLDLLVNNASQFCPTESGSVQEETWNKLMGVNLSFPFFLSQAAFPHL-KRSHGSII 147
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 277 ILINNAGILRDKSFTKMTEQDWDLIQAVHLK 369
IL+N+AGI +D KM EQD+D + V+LK
Sbjct: 276 ILVNSAGIAKDALLLKMKEQDFDDVIDVNLK 306
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 LIQAVHLKGAFKTTHAAWETFRKQKY--GRIVMTSSNAGLFGNFGQANYSAAKLGL 507
+I KG F + + K G I+ SS GN GQANY+A+K G+
Sbjct: 373 VITCYSCKGTFLMCQTTAKAMVENKINNGSIINISSIVAKSGNMGQANYAASKAGV 428
>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 268 RIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSS 447
R+DIL+NNAG+ + + K T ++ V+ G F T+ + + RIV+ SS
Sbjct: 147 RLDILVNNAGVYQPAN--KKTVDGFETQFGVNHLGHFLLTNMLLDLLKASAPSRIVVVSS 204
Query: 448 NAGLFGN 468
G N
Sbjct: 205 RLGFRAN 211
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/81 (29%), Positives = 33/81 (40%)
Frame = +1
Query: 265 GRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTS 444
GRIDIL+NNAGI T+ + G + + A + G I+ S
Sbjct: 83 GRIDILVNNAGISHIGMLETQTQSLVKETFNTNFFGVLRMSKAVIPRMKSDHSGHIINIS 142
Query: 445 SNAGLFGNFGQANYSAAKLGL 507
S AG G Y A+K +
Sbjct: 143 STAGHTGMPFTGLYCASKFAV 163
>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
Length = 316
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 268 RIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSS 447
R+DIL+NNAG+ K TE ++++ V+ F T+ + ++ RI+ SS
Sbjct: 116 RVDILMNNAGVAWIP--FKRTEDGFEMMFGVNHLSHFLLTNLLLDKLKRSAPSRIINVSS 173
Query: 448 NAGLF 462
+ LF
Sbjct: 174 KSHLF 178
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 244 KNGNDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKY 423
K+ ++GRID L+NN G + M+ + W+ + +L G F A+ + +
Sbjct: 107 KSTLSSYGRIDYLVNNGGGQFLCPVSNMSYKGWNAVIDTNLNGTFLCCTEAYRLWMSEHG 166
Query: 424 GRIV 435
G IV
Sbjct: 167 GSIV 170
>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 235 EANKNGNDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFR 411
E K N+ R+D+LINNAG L + K T + +H + F TH ET +
Sbjct: 140 EFAKEVNEEESRVDVLINNAGYLGSQ---KKTVDKLEYTLQLHSRRNFHLTHYNIETLK 195
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 DNFGRIDILINNAGI-LRDKSFTKMTEQDWDLIQAVHLKGAFKTT 387
D FGR+DIL NNAGI +R+ + W I +++KG T
Sbjct: 80 DVFGRLDILCNNAGIAVRENDL--LRSGAWKTIIDINVKGVILGT 122
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 304 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRK 414
RD +F KM +QD+D+ Q ++ K T + A F+K
Sbjct: 188 RDSNFLKMMKQDFDINQVLYNKDLDITVYMAKRIFQK 224
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 256 DNFGRIDILINNAGILRDKS 315
+ +G +DIL+NNAGIL+ +S
Sbjct: 96 EKYGGLDILVNNAGILKKES 115
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 318 EALITENASIVDKNINPPKIIIAVFISFSPSTTEL*SATATPPLSLISLTT 166
EA + +++ ++ P+ IIA + P TT +T TP +++ +TT
Sbjct: 1778 EATMAPESTLAPESTLAPETIIASETTLEPETTMAPESTVTPETTMVPVTT 1828
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 EANKNGNDNFGRIDILINNAGILRDKSFTKMTE 333
EA + + ++DIL NNAGI+ +K++ K E
Sbjct: 107 EAIRQTVKDHSKLDILCNNAGIIDEKNWPKSVE 139
>SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 509 WLSQHIGH*RRKIQYQGEHNCSHGGVSSH 595
W S H+GH RK C H G+ +H
Sbjct: 69 WCSSHVGHTGRKQDISLAGGCWHAGIVAH 97
>SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYG 426
+K+ K E+ + ++ HL+G +T+ WE F+ + G
Sbjct: 80 EKAVYKFMEKMLEEVKYSHLRGRLQTSRTVWEKFKLKTMG 119
>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
Length = 319
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 253 NDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRI 432
N+ RI ILINNAG+ + TE +++I AV+ F + E ++ RI
Sbjct: 111 NNKEERIHILINNAGV--GFIPFRRTEDGFEMIFAVNHLSHFLLINLLLEKLKRSAPSRI 168
Query: 433 VMTSS 447
+ SS
Sbjct: 169 INVSS 173
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 161 DAVVKEIKDKGGVAVADYNSVVEGEK 238
D V EI D+GG+ V DY S E E+
Sbjct: 1381 DEVAGEIDDEGGLGVGDYGSDSEQEE 1406
>SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)
Length = 597
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 697 HQYH*RTRVPCXQQLGAINSGFMASYISGGRISSVRRDAAV 575
HQY +T C +G IN+ Y+S +SS+R+D +
Sbjct: 197 HQYE-KTSSLCYTTIGVINTKRRHHYVSLLLVSSIRKDVII 236
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 697 HQYH*RTRVPCXQQLGAINSGFMASYISGGRISSVRRDAAV 575
HQY +T C +G IN+ Y+S +SS+R+D +
Sbjct: 369 HQYE-KTSSLCYTTIGVINTKRRHHYVSLLLVSSIRKDVII 408
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 697 HQYH*RTRVPCXQQLGAINSGFMASYISGGRISSVRRDAAV 575
HQY +T C +G IN+ Y+S +SS+R+D +
Sbjct: 464 HQYE-KTSSLCFTTIGVINTKRRHHYVSLLLVSSIRKDVII 503
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 697 HQYH*RTRVPCXQQLGAINSGFMASYISGGRISSVRRDAAV 575
HQY +T C +G IN+ Y+S +SS+R+D +
Sbjct: 511 HQYE-KTSSLCFTTIGVINTKRRHHYVSLLLVSSIRKDVII 550
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +1
Query: 280 LINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGL 459
++ A +LRD + M + + A +KGAF + + VM SS + +
Sbjct: 2790 IVLTAMVLRDNLISLMELNSFRDVLAPKVKGAFLLHRMSLQ----MDLDFFVMFSSLSSV 2845
Query: 460 FGNFGQANYSA 492
GN GQ+ YSA
Sbjct: 2846 IGNTGQSAYSA 2856
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,522,473
Number of Sequences: 59808
Number of extensions: 449966
Number of successful extensions: 1158
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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