Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0877
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    29   0.76 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    28   1.8  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   7.1  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   7.1  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   7.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.4  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 HLEYHEGERREIDTNSPGALPSRESSLGGDQDVRVA 400
           H++ HE  +  ++T +PG + S  + L  DQ   V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 243 QSDRLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMY---GW 398
           Q+D L  +   L   E +S+    N E+++  + ELS ++K A  E ++Y   GW
Sbjct: 60  QADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDNKGW 114


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 350 LPSRESSLGGDQDVRVAGLPG 412
           L ++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 303 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKF 482
           +++E+ E+ ++   E + ++K   E  +     +   ++L+  F    QLG    P+DK 
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDK- 596

Query: 483 QALMRTV 503
           QA++  V
Sbjct: 597 QAVLDAV 603


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 270 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 404
           +SL+ W      +KE ++ ++ +++++SR    A     ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 414 NPGSPATRTSWSPPRLLSLDG-RAPGEFVSISLRS 313
           NP  P +RTSW  P+        APG   S S  S
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSS 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,191
Number of Sequences: 5004
Number of extensions: 56102
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)