Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0877
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arre... 34 0.13
D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C prot... 34 0.13
D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C prot... 34 0.13
U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf (tbp-associ... 29 3.8
U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine rece... 29 5.0
U58732-5|AAW88398.1| 337|Caenorhabditis elegans Serpentine rece... 29 5.0
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 29 5.0
Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine rece... 28 6.6
>U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arrest
at two-fold protein10 protein.
Length = 161
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 387 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSGWNRTTPLRRSARTKMRV 560
M+G QDF + TLR++ +K+ G L D+F AL+ TV+ L + R R+
Sbjct: 44 MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRL 102
>D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 387 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSGWNRTTPLRRSARTKMRV 560
M+G QDF + TLR++ +K+ G L D+F AL+ TV+ L + R R+
Sbjct: 44 MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRL 102
>D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 387 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSGWNRTTPLRRSARTKMRV 560
M+G QDF + TLR++ +K+ G L D+F AL+ TV+ L + R R+
Sbjct: 44 MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRL 102
>U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 11.1
protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 309 KENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 446
+ENE ++T + LS + E + Y FQ T+RR+ +Y+
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYT 272
>U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine
receptor, class v protein5, isoform a protein.
Length = 333
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 FQDFTLRRMFKKYSQLGVAALPDDKFQALM-RTVSGWN 515
F +F++ F+KYS L PD +F ++ R VSG++
Sbjct: 54 FVEFSITMRFRKYSSLYAFFEPDTEFHGIIPRIVSGFH 91
>U58732-5|AAW88398.1| 337|Caenorhabditis elegans Serpentine
receptor, class v protein5, isoform b protein.
Length = 337
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 FQDFTLRRMFKKYSQLGVAALPDDKFQALM-RTVSGWN 515
F +F++ F+KYS L PD +F ++ R VSG++
Sbjct: 54 FVEFSITMRFRKYSSLYAFFEPDTEFHGIIPRIVSGFH 91
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 533 KICSYKNESKCDLSLEPEITEIFSTSQDPEELKHTWVEWHNAAG 664
K Y NES ++ + QD E+++H W ++H G
Sbjct: 236 KFMKYCNESLLEIIGRDNFATLEEMVQDSEQVEHIWNKYHQIIG 279
>Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical
protein C46C2.6a protein.
Length = 195
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 443 QSAGRCGSA*RQIP--SFDENCIGMESNYATAKICSYKNESKCDLS 574
Q +GRC IP SF E CI + S T K C + C S
Sbjct: 69 QHSGRCADGTACIPDSSFGEPCIKLFSYQMTKKFCCKSDPIDCSWS 114
>U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 5 protein.
Length = 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 520 VRFHPDTVLIKAWNLSSGRAATPS*LYFL 434
+ +HP L + W LS A PS LYFL
Sbjct: 15 ISYHPIYRLAQFWTLSVSLLAVPSLLYFL 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,692
Number of Sequences: 27780
Number of extensions: 321755
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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