Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0877
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04680.1 68415.m00478 DC1 domain-containing protein contains ...    28   6.1  
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica...    28   8.1  
At2g27990.1 68415.m03392 homeodomain-containing protein                28   8.1  

>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 485 SFDENCIGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHTWVEWHNAAG 664
           SF   C G   N     IC +K + +C     P +  I   S   E L   +V WH+  G
Sbjct: 81  SFCSRCEGRFENGYICSICDFKLDFRCAKGPAPLL--ILEKSNLHEHLLEFFVGWHSWKG 138


>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
           to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
           thaliana)
          Length = 616

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 255 LRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFT 419
           L  NR +L + +    +  E   K  Q   E  + +    E  + YGWQD   FT
Sbjct: 307 LEGNRKAL-DVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFT 360


>At2g27990.1 68415.m03392 homeodomain-containing protein 
          Length = 584

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 623 PQGLGSWRIFQLSQAPKIDHIY 558
           PQG  +WRI  LSQ   ++H Y
Sbjct: 79  PQGPSNWRISDLSQPSTVNHGY 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,052
Number of Sequences: 28952
Number of extensions: 302130
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)