Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0876
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   108   6e-25
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.0  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   1.8  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   7.1  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.3  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  108 bits (260), Expect = 6e-25
 Identities = 54/80 (67%), Positives = 63/80 (78%)
 Frame = +1

Query: 22  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 201
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 202 TLHPAVHAGILARLSDSDRK 261
           TLHPAVH GILAR   SD K
Sbjct: 63  TLHPAVHGGILARDIPSDEK 82



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 52/135 (38%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
 Frame = +3

Query: 255 QEDMKRQKYEMISVVVCXLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPR-----TT 419
           ++D+  Q  E I +VVC LYPF +T++KP+VT+ +AVE IDIGGVTLLRA  +     T 
Sbjct: 81  EKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRAAAKNHARVTI 140

Query: 420 TGSPSSVTRPTTML*SKKSKRTNIIRRLWAKAEISPEGVHSYXGLXPRHIGLLSASNTSP 599
              P+     T    S   K T   R  +A    +     SY      +         + 
Sbjct: 141 LSDPADYATFTDKFLS--DKLTQDDRNTYALKAFA--STASYDAAITDYF----RKQYAA 192

Query: 600 GQAQLTLRYGMNPHQ 644
           G  QLTLRYG NPHQ
Sbjct: 193 GVDQLTLRYGANPHQ 207



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 410 KNHDRVTVVCXPADYDAVVKEIKENK 487
           KNH RVT++  PADY     +   +K
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDK 158



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 511 RQRLALKAFTHTXDYXLAISXYF 579
           R   ALKAF  T  Y  AI+ YF
Sbjct: 164 RNTYALKAFASTASYDAAITDYF 186


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 138 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 230
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 391 VTPPMSMFSTASATVTS-GLDTVWTNGYRXQTT 296
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 484 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 368
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 448 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWT 320
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYS 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,201
Number of Sequences: 5004
Number of extensions: 43477
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)