Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0876
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 87 9e-18
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 32 0.45
10_08_0415 - 17761594-17762382 30 1.4
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 30 1.4
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 2.4
09_04_0652 - 19227686-19227926,19229368-19232294 28 7.3
08_01_0621 - 5426210-5427787 28 7.3
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 7.3
03_02_0814 + 11467775-11468308 28 7.3
03_01_0112 + 902459-902770,903275-903280 28 7.3
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 9.7
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 27 9.7
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 9.7
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 87.4 bits (207), Expect = 9e-18
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = +1
Query: 16 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 195
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 196 VKTLHPAVHAGILAR 240
VKTLHP+VH GILAR
Sbjct: 106 VKTLHPSVHGGILAR 120
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 294 VVVCXLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 404
VVV LYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 564 HIGLLSASN-TSPGQAQLTLRYGMNPHQ 644
H+G + N T P + TLRYG NPHQ
Sbjct: 247 HVGDVFPPNFTVPLSLKSTLRYGENPHQ 274
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 31.9 bits (69), Expect = 0.45
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 492 IRRLWAKAEISPEGVHSYXGLXPRH 566
+++LWA AE++P+G+HS+ +H
Sbjct: 833 LQQLWATAEVNPQGIHSHPNQQLQH 857
>10_08_0415 - 17761594-17762382
Length = 262
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 105 WRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 248
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 374 DVLDRVRHGHVRLRYRLDE-RVQXTDHHAYHLV 279
DVL +R GHV L Y L E DHH LV
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHHMDDLV 719
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 395 EGHAADVDVLDRVRHGHVRLRYRLDERVQXTDHHAYH 285
+GH D DR HGH R R+ D+R D YH
Sbjct: 1296 DGHDRDHHRHDRRHHGHDR-RHHFDDRGYHYDDRGYH 1331
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 126 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 227
SE+ P S C S + ++G + GTCW
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 463 YSIVVGRVTDDGDPVVVLGXARRRVTPP 380
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 122 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 15
AV PP+A CRPH RL + V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>03_02_0814 + 11467775-11468308
Length = 177
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -2
Query: 302 DHHAYHLVLLTFHVFLSESDNRAK--IPACTAGCKV--FTRPPSISGA 171
DHH +H +H F S S RA +PA AG V + PP+++ A
Sbjct: 82 DHHHHHHQQQRYHSFSSSSFGRASMMMPAAAAGGVVPRSSMPPTMATA 129
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 192 TSEHLRCSRDVRHILNCEAGVPK 124
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 136 RRSEAPWRYRHWQSTAGHIPTGS 68
RR PW++ HWQ+ G + + S
Sbjct: 20 RRPVHPWQWHHWQNLLGLLSSSS 42
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Frame = +3
Query: 72 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 236
P G WP + Y +S PHS ++ V H G A G S LS
Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122
Query: 237 S 239
S
Sbjct: 123 S 123
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/74 (29%), Positives = 27/74 (36%)
Frame = +3
Query: 24 SSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGEN 203
S R DG + V PA+ RH R SSR GH + GD SG
Sbjct: 707 SPSRDSHDGEKTATS--VHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRK 763
Query: 204 FTSSGTCWDLSSII 245
+G W +I
Sbjct: 764 GAPAGKGWQEIGVI 777
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,299
Number of Sequences: 37544
Number of extensions: 332727
Number of successful extensions: 1109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -