Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0876
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   6e-28
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      69   3e-12
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        29   4.3  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.5  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 27   9.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  121 bits (291), Expect = 6e-28
 Identities = 57/82 (69%), Positives = 69/82 (84%)
 Frame = +1

Query: 13  GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGG 192
           G LALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+IT APEMLGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 193 RVKTLHPAVHAGILARLSDSDR 258
           RVKTLHPAVH GILAR+S+ D+
Sbjct: 93  RVKTLHPAVHGGILARVSEGDK 114



 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 51/135 (37%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
 Frame = +3

Query: 261 DMKRQKYEMISVVVCXLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPR-----TTTG 425
           DM +Q +E I VVVC LYPFV TV+K  V V++AVE IDIGGVTLLRA  +     T   
Sbjct: 116 DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAAKNHERVTVVC 175

Query: 426 SPSSVTRPTTML*SKKSKRT--NIIRRLWAKAEISPEGVHSYXGLXPRHIGLLSASNTSP 599
            P    +  + +   ++  T  +  + L  KA        S+       I        S 
Sbjct: 176 DPEDYNKVLSEMTENETCDTLPDTRKTLALKA-------FSHTASYDMAISDYFRKEYSE 228

Query: 600 GQAQLTLRYGMNPHQ 644
             + + LRYGMNPHQ
Sbjct: 229 NVSHIPLRYGMNPHQ 243



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 410 KNHDRVTVVCXPADYDAVVKEIKENK 487
           KNH+RVTVVC P DY+ V+ E+ EN+
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENE 191



 Score = 35.1 bits (77), Expect = 0.049
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 511 RQRLALKAFTHTXDYXLAISXYF 579
           R+ LALKAF+HT  Y +AIS YF
Sbjct: 200 RKTLALKAFSHTASYDMAISDYF 222


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 33/48 (68%), Positives = 38/48 (79%)
 Frame = +3

Query: 261 DMKRQKYEMISVVVCXLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 404
           DM +Q +E I VVVC LYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 13  DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 410 KNHDRVTVVCXPADYD 457
           KNH+RVTVVC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 163 CPTHLEL*GRRSEAPWRYRHWQSTAGHIPTGSLLTRVDPSCLK 35
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -3

Query: 493 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 323
           +  V+   +  S+   R+T   D V        R+TP M    TAS T   +T  +DTV+
Sbjct: 133 LTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVY 192

Query: 322 TNGYRXQTTTLII 284
           T        TL++
Sbjct: 193 TASVTFYRLTLVM 205



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 484 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 314
           V+   +  S+   RVT   D V        R+TP M    TAS T   +T  +DTV+T  
Sbjct: 68  VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127

Query: 313 YRXQTTTLII 284
                 TL++
Sbjct: 128 VTFYRLTLVM 137



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -3

Query: 493 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 323
           +  V+   +  S+   R+T   D V        R+TP M    TAS T   VT  +DTV+
Sbjct: 269 LTLVMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVY 328

Query: 322 TNGYRXQTTTLIIS 281
           T        TL+++
Sbjct: 329 TASVTFFRVTLVMN 342


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 369 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 503
           N D+      +  P      PSS TR T    +KK  R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 478 FDFFDYSIVVGRVTDDGDPVVVL 410
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 324  QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 455
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   KWKTSSSQRFRQDGSTLVSKEP 74
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 351 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTR 446
           +A AV N+ +   T LR  P T  TTGSPS VTR
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTR 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,163
Number of Sequences: 59808
Number of extensions: 383311
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)