Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0876
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 118 5e-27
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 30 1.6
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 29 2.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 6.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 6.5
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 28 6.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.5
AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical... 28 6.5
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 27 8.6
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 27 8.6
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 27 8.6
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 27 8.6
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 27 8.6
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 27 8.6
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 118 bits (283), Expect = 5e-27
Identities = 58/86 (67%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 SNGK-LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEM 183
++GK LA++SVSDKTGL+ LA L GL LIASGGTA A+R+ G+ V DV+D+T+ PEM
Sbjct: 2 TDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEM 61
Query: 184 LGGRVKTLHPAVHAGILARLSDSDRK 261
LGGRVKTLHPAVH GILAR ++SDRK
Sbjct: 62 LGGRVKTLHPAVHGGILARDTESDRK 87
Score = 70.5 bits (165), Expect = 9e-13
Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Frame = +3
Query: 255 QEDMKRQKYEMISVVVCXLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPS 434
++D+++ +SVVVC LYPF +TV D +V +AVENIDIGGVTLLRA + S
Sbjct: 86 RKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRAAAKNHE-RVS 144
Query: 435 SVTRPTT---ML*SKKSKRTNIIRRLWAKAEISPEGVHSYXGLXPRHIGLLSASNTSPGQ 605
+ P ++ KS T RR + + E SY G + G+
Sbjct: 145 VICDPADYDHIISELKSGGTTRERRQLLALK-AFEHTTSYDESIS---GFMRRRFAGNGE 200
Query: 606 AQLTLRYGMNPHQ 644
L LRYG NPHQ
Sbjct: 201 RALPLRYGTNPHQ 213
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +2
Query: 410 KNHDRVTVVCXPADYDAVVKEIK 478
KNH+RV+V+C PADYD ++ E+K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 511 RQRLALKAFTHTXDYXLAISXY 576
RQ LALKAF HT Y +IS +
Sbjct: 169 RQLLALKAFEHTTSYDESISGF 190
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -2
Query: 188 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 9
PS S A S +RP +++ A P A H+D+LF E LRR +FPF
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57
Query: 8 D 6
+
Sbjct: 58 E 58
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 472 NQREQTSSDDFGPRQRLALKAFTHTXDYXLAISXYF 579
+ R +T +D+ + LA+ FTHT + I YF
Sbjct: 118 SNRPKTGEEDYFEKLSLAMDIFTHTWSLSVEIQFYF 153
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 4 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 162
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 4 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 162
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 4 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 162
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 4 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 162
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 472 NQREQTSSDDFGPRQRLALKAFTHTXDYXLAISXYF 579
+ R +T +D+ + +A+ FTHT + I YF
Sbjct: 120 SNRPKTDQEDYFQQLSIAIDIFTHTWSLSVEIQFYF 155
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 321 VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 500
+Q +P AVE+ ++ V L A P GSP V T + ++K K
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833
Query: 501 LWAKAEISPEGVHSYXGLXP 560
W KAE++ + + L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 321 VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 500
+Q +P AVE+ ++ V L A P GSP V T + ++K K
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833
Query: 501 LWAKAEISPEGVHSYXGLXP 560
W KAE++ + + L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853
>AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical
protein F37C4.1 protein.
Length = 612
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 472 NQREQTSSDDFGPRQRLALKAFTHTXDYXLAISXYF 579
+ R +T+++D+ +A+ FTHT + I YF
Sbjct: 119 SNRPKTAAEDYFTMLSIAIDIFTHTWSLSVEIQFYF 154
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 111 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 224
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 472 NQREQTSSDDFGPRQRLALKAFTHTXDYXLAISXYF 579
+ R T +D+ + +A+ FTHT + I YF
Sbjct: 117 SNRPHTGEEDYFEKLLIAIDLFTHTWSLSVEIQFYF 152
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 472 NQREQTSSDDFGPRQRLALKAFTHTXDYXLAISXYF 579
+ R T +D+ + +A+ FTHT + I YF
Sbjct: 115 SNRPHTGEEDYFEKLLIAIDLFTHTWSLSVEIQFYF 150
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 111 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 224
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 111 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 224
Y+H A H+S HH +TG R +N T + C
Sbjct: 35 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 72
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 205 KFSPDLRASPVLS*CPTHLEL*GRRSEAPWRYRHWQSTAGH 83
KF R P S C T + G +EAP +R Q+TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,647,672
Number of Sequences: 27780
Number of extensions: 259455
Number of successful extensions: 786
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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