Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0876
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    93   2e-19
At1g64410.1 68414.m07301 hypothetical protein                          29   2.0  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    29   2.0  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    28   6.1  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   8.1  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 1   GASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPE 180
           G+S  K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T  PE
Sbjct: 67  GSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPE 126

Query: 181 MLGGRVKTLHPAVHAGILAR 240
           ML GRVKTLHP +H GILAR
Sbjct: 127 MLDGRVKTLHPNIHGGILAR 146



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
 Frame = +3

Query: 294 VVVCXLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRAXPR--------TTTGSPSSVTR 446
           VVV  LYPF + V+ P  ++  D +ENIDIGG  ++RA  +          +G   +V  
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRAAAKNHKDVLIVVDSGDYQAVLE 225

Query: 447 PTTML*SKKSKRTNIIRRLWAKAEISPEGVHSYXGLXPRHIGLLSASNTSPGQAQLTLRY 626
                 S +  R  +  + +         V  +             S T P   + +LRY
Sbjct: 226 YLKGGQSDQQFRRKLAWKAFQHVAAYDSAVSEWLWKQTEGKEKFPPSFTVPLVLKSSLRY 285

Query: 627 GMNPHQ 644
           G NPHQ
Sbjct: 286 GENPHQ 291


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 410 KNHDRVTVVCXPADYDAVVKEIKENKHH 493
           K HDRVTV   P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 410 KNHDRVTVVCXPADYDAVVKEIKENKHH 493
           K HDRVTV   P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/89 (22%), Positives = 35/89 (39%)
 Frame = +3

Query: 321 VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 500
           +++ S PD  V        IGGV        TTT + +  +  + +L   +     ++  
Sbjct: 165 LKSCSSPDSMVTSTSTGTQIGGVIGTTVTTTTTTTTAAGESTRSVILVDSQENGVRLVHA 224

Query: 501 LWAKAEISPEGVHSYXGLXPRHIGLLSAS 587
           L A AE   +   +      + IG L+ S
Sbjct: 225 LMACAEAIQQNNLTLAEALVKQIGCLAVS 253


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 42  QDGSTLVSKEPVGMWP--AVDCQWRYRHGASERRP 140
           +DGS++ S EP+  +P  A DC + Y+   ++  P
Sbjct: 565 KDGSSICSSEPLCSFPSHAEDCPFSYKPSGNQEGP 599


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 395 EGHAADVDVLDRVRHGHVRLRYRLDERVQXTDHHAYHLVLLTFHV 261
           +G+A     +  +R G     +RL E +  TDHHA  L +    +
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,538
Number of Sequences: 28952
Number of extensions: 244935
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)