Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0874
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.1  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    27   3.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   6.4  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   6.4  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   8.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.4  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 429 SGVIVYFFRERAVYSSRISKQFYFQIARSKGPYHSGGVP 313
           + +I+  +RE  +  ++I +  Y Q+   K  YH+   P
Sbjct: 639 NAIIISMYREHLISRTQIQELLYHQVPSEKAGYHTLRAP 677


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 665 LSNLDKRTASHRRIDSTVFRCVKSHFER*W 576
           ++N   R A HR+ D+   R V+ H ER W
Sbjct: 380 VTNFACRLAKHRKSDTLDVRDVQLHLERNW 409


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 340 LRPCDLE-VKLLRDSRTVYSALAKEVDDYAGW 432
           L P  +E ++LLRD +T +     +VD   GW
Sbjct: 586 LEPQTIESIRLLRDQKTPFVVALNKVDRLYGW 617


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 394 CIQFSNLEAILLPNRTVEGTIPFRRCAMSFR 302
           C+Q    EA L   RTV  T+ F R  M ++
Sbjct: 27  CLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 118 SYPNAAVSYDFEHFFRNTKSNTRSLPARL--IEECFVMY 8
           S+ +A +SY    F +  K NT  LP+    I + +V Y
Sbjct: 280 SFTHAPLSYSLPLFIQMYKQNTTGLPSNFSGISQLYVTY 318


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 121 CSYPNAAVSYDFEHFFRNTKSNTRSLPAR 35
           CSYP     Y+F  FF   K+    +  R
Sbjct: 15  CSYPTFRTLYEFNKFFLRYKTEISKIQRR 43


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   GIHHKTFFNQSRRE*PRIRFSV 70
           GI + TFFN+S++  P   FSV
Sbjct: 786 GIINNTFFNESKKRMPFFGFSV 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,144
Number of Sequences: 5004
Number of extensions: 62873
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)