Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0874
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886...    31   1.2  
05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    28   8.8  
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660...    28   8.8  

>01_05_0478 -
           22587881-22588021,22588126-22588266,22588436-22588643,
           22589199-22589238,22589425-22589647,22590826-22590970,
           22591053-22591156,22591298-22591396,22591506-22591684,
           22591948-22592167
          Length = 499

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 240 RSTSYEARRECGFIRKS*INKRNDMAHRRNGMVP 341
           RS     RRE G IR S  +K+ D AHR++  +P
Sbjct: 301 RSQILRKRRELGDIRSSETSKKTDKAHRKDKELP 334


>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 647 RTASHRRIDSTVFRCVKSHFER*WVQQWKDFL---RFMRVQHFTGDSHCLPK 501
           +T  ++R +S +     S F   ++ +WKDF      +   HF  +  C PK
Sbjct: 314 KTELYQRQESLILSSCTSRFTLFYMMKWKDFFPNKDLVEPPHFEAELLCYPK 365


>02_02_0080 +
           6598427-6598663,6599246-6599391,6599567-6599669,
           6600407-6600593,6600699-6600792,6601290-6601443,
           6601751-6601855,6601937-6602053,6602248-6602361,
           6602891-6603073,6603207-6603486,6603565-6603686,
           6603763-6603860,6603941-6604118,6604439-6604553,
           6604656-6604723,6604825-6604902,6604986-6605060,
           6605156-6605338
          Length = 878

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +3

Query: 459 KKHGSYTRVFTSSYFG*AMGIPSEVLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMA 638
           K HG Y  V+  +  G    +     +P +A++ FP  D  +FK     T +   +    
Sbjct: 121 KMHGFYRSVYELN--GEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSETVAL 178

Query: 639 CSALVKVAKKNG---AKVYEDCPVVDVSLFA 722
            +  V   K NG   A  +++ P++   L A
Sbjct: 179 SNMPVVEEKVNGLIKAVYFQETPIMSTYLVA 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,113,352
Number of Sequences: 37544
Number of extensions: 419267
Number of successful extensions: 1001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)