Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0874
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             30   1.7  
SB_21018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          29   3.9  
SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          28   9.0  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 KRGV-NAVLLERAKLTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGW 432
           K GV N +LLER KLTSGTTWH+AG++W LRP D EV+++  +R +  +L +E     GW
Sbjct: 129 KMGVKNVILLERDKLTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGW 188

Query: 433 INNGGMFISRSTVRTQEYLRLHTLG 507
           I NGG+FI+ +  R  EY RL TLG
Sbjct: 189 IENGGLFIANNKERLDEYKRLMTLG 213



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 35/80 (43%), Positives = 48/80 (60%)
 Frame = +3

Query: 474 YTRVFTSSYFG*AMGIPSEVLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALV 653
           Y R+ T    G   GI S VLDP   ++++PL++       LY+  DGTIDPA   SAL 
Sbjct: 206 YKRLMT---LGHCYGIDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGWASALT 262

Query: 654 KVAKKNGAKVYEDCPVVDVS 713
           + A K GAKV+E+CPV  ++
Sbjct: 263 RGATKRGAKVFENCPVTGIT 282


>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/22 (59%), Positives = 20/22 (90%), Gaps = 1/22 (4%)
 Frame = +1

Query: 256 KRGV-NAVLLERAKLTSGTTWH 318
           KRG+ + VLLE+++LT+G+TWH
Sbjct: 309 KRGLKDVVLLEKSELTAGSTWH 330


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 571 WTHQRSKWLFTQRKTVLSIRRWLAVR 648
           W H + +W+ T  K V ++ +W+ +R
Sbjct: 379 WGHTQVRWVVTHNKWVFTLNKWVVIR 404



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 571 WTHQRSKWLFTQRKTVLSIRRWLAVR 648
           W    +KW+FT  K V+   +W+ +R
Sbjct: 386 WVVTHNKWVFTLNKWVVIRNKWVVIR 411


>SB_21018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 382 RTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRLHTLGKQWE-SPVKCWTLMKRRK 558
           R VY  L K++ D     +  G    RSTV TQ     H +G+  +  P      +   K
Sbjct: 589 RCVYKYLKKQLFDLLD-DSQHGFLQGRSTV-TQLLAFYHQIGQALDRGPQSDIVFLDLAK 646

Query: 559 SFHCWTHQRSKWLFTQRKTVLSIRRWL 639
           +F   +HQR  W  +    + ++ +WL
Sbjct: 647 AFDSVSHQRLLWKLSHYGILGNLLQWL 673


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  VPKKMFKVIRDGSVRVRASNFLKRSNTIRFSSGAGS 175
           VP++MFK++  G   V  S+F+ R    RF S   S
Sbjct: 438 VPERMFKIVLAGDAAVGKSSFILRLCRNRFHSALNS 473


>SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 432 DKQWRHVHIKKHGSYTRVFTSSYFG*AMGIPSEVLDPHEAQKIFPLLDPSAFKM--ALYA 605
           D++ RH  IKK   Y R+  +S       +     DP+    I    D S++ +   L  
Sbjct: 15  DRKSRHRRIKKQRRYERLAATSQLSLCYKLQVTFYDPN----ITVSADASSYGIGGVLLQ 70

Query: 606 TEDGTIDPAMACSALVKVAKKNGAKVYEDC 695
            + GT+ P   CS  +   +   +++ ++C
Sbjct: 71  EDKGTLRPVAFCSRTLTSTETRYSQIEKEC 100


>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 593 GSLRNGRRYYRSGDGLQCACQGC 661
           G++ N  + Y SG GLQ +CQ C
Sbjct: 118 GNVLNRSKQYGSGQGLQKSCQNC 140


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 293 LALSNKTAFTPRFIAGRACYSPLCL 219
           L LS K  FTP  ++ + C++PL L
Sbjct: 706 LTLSTKPCFTPLTLSTKLCFTPLTL 730


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,159,811
Number of Sequences: 59808
Number of extensions: 483003
Number of successful extensions: 4172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)