Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0874
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    46   4e-05
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    38   0.010
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    38   0.010
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    28   5.9  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   7.8  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   7.8  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 528 EVLD-PHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALVKVAKKNGAKVYEDCPVV 704
           E+LD   E  + +P L     ++AL++ ED  +DP   C  L  +AK  GA +YE  PV+
Sbjct: 134 ELLDCQSEMLERWPFLQTEDVQLALFSPEDVALDPVALCQHLALIAKDYGALIYESNPVL 193

Query: 705 DVSL 716
           +V +
Sbjct: 194 EVHI 197


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 531 VLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALVKVAKKNGAKVYE 689
           +L P + +++ P +D S    AL+ T DGTI       ALV  AK  GA+V +
Sbjct: 147 LLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGGAQVID 199



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +1

Query: 256 KRGVNAVLL-ERAK---LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDY 423
           KR +  VLL ERA      SGT++H+ G+V +  P      +L  S  +YS L  E    
Sbjct: 48  KRNIKDVLLLERASGVASPSGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVN 107

Query: 424 AGWINNGGMFISRSTVRTQEY 486
             +   G + ++ +  R  E+
Sbjct: 108 IDFQPTGTIRLATNETRLAEF 128


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 531 VLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALVKVAKKNGAKVYE 689
           +L P + +++ P +D S    AL+ T DGTI       ALV  AK  GA+V +
Sbjct: 154 LLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGGAQVID 206


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 355 LEVKLLRDSRTVYSALAKEVDD--YAGWINN 441
           LE+K+     T++SAL +E +   Y GW NN
Sbjct: 17  LEIKVQFSKETLFSALQQEAETQRYDGWYNN 47


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LTSGTTWHTAGMVWSLRPCDLEVKLL 372
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LTSGTTWHTAGMVWSLRPCDLEVKLL 372
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,037
Number of Sequences: 27780
Number of extensions: 360340
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)