Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0874
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31110.1 68415.m03799 expressed protein 32 0.45
At1g73750.1 68414.m08539 expressed protein contains Pfam profile... 30 1.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 30 1.8
At1g01680.1 68414.m00086 U-box domain-containing protein 29 2.4
At2g21400.1 68415.m02547 lateral root primordium (LRP) protein-r... 29 3.2
At1g10980.1 68414.m01260 expressed protein ; expression support... 28 5.6
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r... 28 7.3
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ... 28 7.3
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ... 28 7.3
>At2g31110.1 68415.m03799 expressed protein
Length = 216
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 310 TWHTAGMVWSLRPCDL--EVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVRTQE 483
+WH L+P D E L A K ++ +A WINN + SR+ V Q
Sbjct: 55 SWHWWTHTSGLQPWDYMREGNQLYKDMNRLVAYYKGLNTWARWINNN-IVPSRTQVFFQG 113
Query: 484 YLRLHTLGKQWESPVK 531
+H G++W P+K
Sbjct: 114 VSPVHYDGREWNEPLK 129
>At1g73750.1 68414.m08539 expressed protein contains Pfam profile:
PF00561 alpha/beta hydrolase fold
Length = 452
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +3
Query: 156 FRVAPVPKMRSCRRPMLLLSGEA*RAVTRSTSYEARRECGFIR 284
+R P PK P+LLLSG AVT Y+ EC F R
Sbjct: 77 WRYLPSPKAPKRNHPLLLLSGIGTNAVT----YDLSPECSFAR 115
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +3
Query: 486 FTSSYFG*AMGIPSEVLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALVKVAK 665
F S G A I + ++ AQ I + +A EDG ID + C + V V K
Sbjct: 612 FAESSAGVAGEIDAVAMESEAAQSIKQCAEAH---VAPSIIEDGEIDREVNCGSEVNVTK 668
Query: 666 KNGAKVYEDCPVVDVS 713
V ED P +VS
Sbjct: 669 TTPVAVREDIPPKEVS 684
>At1g01680.1 68414.m00086 U-box domain-containing protein
Length = 308
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +1
Query: 349 CDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRLHTL 504
C + ++++RD E +++ W+ +GG R++ +T + L H L
Sbjct: 239 CPISMEIMRDPHVAADGFTYEAEEFRKWLRSGG----RTSPKTNKPLENHNL 286
>At2g21400.1 68415.m02547 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 174
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 526 VKCWTLMKRRKSFHCWTHQRSKWLFTQRKT 615
++C T K K+FHC TH +S W+ R++
Sbjct: 23 MRCRTCCKS-KAFHCQTHIKSTWVPAYRRS 51
>At1g10980.1 68414.m01260 expressed protein ; expression supported
by MPSS
Length = 516
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 468 GSYTRVFTSSYF-G*AMGI-PSEVLDPHEAQKIFPLLDPSAF 587
G +T++ + YF G + GI SE LD H A PLL ++F
Sbjct: 34 GGFTKIANARYFVGGSEGIYGSEFLDVHHASSDTPLLKGNSF 75
>At1g75520.1 68414.m08776 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 346
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 526 VKCWTLMKRRKSFHCWTHQRSKWL 597
++C T K R FHC TH +S W+
Sbjct: 139 MRCRTCCKSR-GFHCQTHVKSTWV 161
>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 945
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 567 LLDPSAFKMALYATE-DGTIDPAMACSALVKVAKKNGAKVYEDCPVVDV-SLF 719
LLD S + L + DGT+ S +++V KK V+ D P V SLF
Sbjct: 589 LLDSSGKDITLSSVHHDGTVQTISGSSTILRVTKKEEEFVFSDIPERPVPSLF 641
>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 918
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 567 LLDPSAFKMALYATE-DGTIDPAMACSALVKVAKKNGAKVYEDCPVVDV-SLF 719
LLD S + L + DGT+ S +++V KK V+ D P V SLF
Sbjct: 589 LLDSSGKDITLSSVHHDGTVQTISGSSTILRVTKKEEEFVFSDIPERPVPSLF 641
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,945
Number of Sequences: 28952
Number of extensions: 330721
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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