Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0873
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 138 6e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 134 2e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 121 9e-29
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 121 9e-29
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 114 1e-26
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 62 1e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 48 2e-06
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.30
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.91
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.91
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.91
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 6.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.5
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 138 bits (335), Expect = 6e-34
Identities = 63/86 (73%), Positives = 74/86 (86%)
Frame = +3
Query: 252 PNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 431
P+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 432 VLTKMKETAEAYLGKTVQNAVITVPA 509
VL KM+ETAEAYLG V +AV+TVPA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPA 146
Score = 137 bits (331), Expect = 2e-33
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS
Sbjct: 147 YFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVS 206
Query: 689 ILTIEDGIFEVKSTA 733
+LTIE+GIFEVK+TA
Sbjct: 207 LLTIEEGIFEVKATA 221
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +1
Query: 82 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 255
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 134 bits (323), Expect = 2e-32
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS
Sbjct: 147 YFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVS 206
Query: 689 ILTIEDGIFEVKSTA 733
+LTIE+GIFEVK+TA
Sbjct: 207 LLTIEEGIFEVKATA 221
Score = 131 bits (316), Expect = 1e-31
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = +3
Query: 252 PNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 431
P+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 432 VLTKMKETAEAYLGKTVQNAVITVPA 509
VL KM+E+AEA+LG V +AV+TVPA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +1
Query: 82 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 255
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 121 bits (292), Expect = 9e-29
Identities = 54/75 (72%), Positives = 71/75 (94%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS
Sbjct: 180 YFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVS 238
Query: 689 ILTIEDGIFEVKSTA 733
+L+I++G+FEV +T+
Sbjct: 239 LLSIDNGVFEVLATS 253
Score = 112 bits (270), Expect = 4e-26
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +3
Query: 252 PNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 431
P NTIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 432 VLTKMKETAEAYLGKTVQNAVITVPA 509
+L+KMK+TAEAYLGK V +AV+TVPA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPA 179
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +1
Query: 85 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 255
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 121 bits (292), Expect = 9e-29
Identities = 58/75 (77%), Positives = 65/75 (86%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS
Sbjct: 151 YFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVS 210
Query: 689 ILTIEDGIFEVKSTA 733
+L I+ G+FEV +TA
Sbjct: 211 LLKIQGGVFEVLATA 225
Score = 117 bits (281), Expect = 2e-27
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +3
Query: 252 PNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 431
P NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 432 VLTKMKETAEAYLGKTVQNAVITVPA 509
VLTKMKE +EA L K V+ AVITVPA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPA 150
Score = 100 bits (239), Expect = 2e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +1
Query: 82 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 255
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 114 bits (274), Expect = 1e-26
Identities = 53/74 (71%), Positives = 64/74 (86%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+S
Sbjct: 193 YFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDIS 250
Query: 689 ILTIEDGIFEVKST 730
IL + +G+FEV+ST
Sbjct: 251 ILELNNGVFEVRST 264
Score = 81.4 bits (192), Expect = 1e-16
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +3
Query: 252 PNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 431
P NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 432 VLTKMKETAEAYLGKTVQNAVITVPA 509
+L+KM+ETA YLGK V+NAV+TVPA
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPA 192
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 73 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 249
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 250 NPTTQY 267
NP +
Sbjct: 109 NPENTF 114
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGT 676
+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G
Sbjct: 151 WFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSN 210
Query: 677 FDVSILTIEDGIFEVKST 730
+ VSI+ G F +KST
Sbjct: 211 YSVSIVEFSRGQFHIKST 228
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +1
Query: 70 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 249
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 250 N 252
N
Sbjct: 63 N 63
Score = 41.9 bits (94), Expect = 9e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 NTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 434
NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 435 LTKMKETAEAYLGKTVQNAVITVPA 509
TK+K AEA L +V + VI++PA
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPA 150
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/71 (28%), Positives = 44/71 (61%)
Frame = +2
Query: 509 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVS 688
YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++ + G +VS
Sbjct: 173 YFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVS 232
Query: 689 ILTIEDGIFEV 721
+++++ G+ +
Sbjct: 233 VVSVKGGLMTI 243
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 85 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 252
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +3
Query: 255 NNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPE 416
+N++ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAH 141
Query: 417 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 506
E S L ++ E+AE +LG V V++VP
Sbjct: 142 EASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 85 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 261
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 262 QYSMPNV 282
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.7 bits (61), Expect = 0.91
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 181 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSSDVSSKMLLC 315
P +A T ER++ AAK A+N T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 77 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 172
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.91
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = -2
Query: 673 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVAGTVI 494
T++ V + +S+ V T + +SS ++ S + + ++ + + T I
Sbjct: 3241 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Query: 493 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 314
T+ T+ S + S+ +TSS S+P+ ++ +L ++T+S S+
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS--SILNSST 3358
Query: 313 TVASSN-LRPMRRLASNIVLLGSSP 242
V SS+ L + S+ V+ S+P
Sbjct: 3359 PVTSSSVLNSSTPITSSTVVNSSTP 3383
Score = 27.9 bits (59), Expect = 1.6
Identities = 31/144 (21%), Positives = 63/144 (43%)
Frame = -2
Query: 673 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVAGTVI 494
T++ V + +S+ V + + +SS ++ S + + ++ + + T I
Sbjct: 829 TSSTVVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 888
Query: 493 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 314
T+ V S + S+ +TSS S+P+ ++ +L +T+S G +
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPI 948
Query: 313 TVASSNLRPMRRLASNIVLLGSSP 242
T +SS L + S+ VL S+P
Sbjct: 949 T-SSSVLNSSTPITSSTVLNSSTP 971
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.2
Identities = 33/145 (22%), Positives = 61/145 (42%)
Frame = -2
Query: 673 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVAGTVI 494
+++ + + S SS L T S S+S I S + F S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 493 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 314
++ T+L + S + +S+ + S +LSS + + + SL+T S+
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSSVIPSSS 675
Query: 313 TVASSNLRPMRRLASNIVLLGSSPP 239
T+ SS+ + ++S+ V SS P
Sbjct: 676 TLVSSSSSLI--VSSSPVASSSSSP 698
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 163 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 5
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 226 AAKNQVAMNPTTQYSMPNVSSDVSSKML 309
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 352 LTTSKGQCFMSACTVASSNLRPMRRLASNIVLLGSSPPGSWRHL 221
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,561
Number of Sequences: 5004
Number of extensions: 70361
Number of successful extensions: 265
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -