Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0872
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.6  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.0  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   6.6  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   6.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.7  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 290 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 385
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 616 SDRDFYVSKDKTIKVPMMYKRGDYKYGESAVL 711
           +D +F+  + K+ K    +K GD KYG++A+L
Sbjct: 666 NDPNFWAYERKSCK----FKNGDVKYGDTAIL 693


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 559 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 654
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 701 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 600
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 5   DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 103
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 486  STQSLIDLAATVFFEKSIFWTSE 418
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,904
Number of Sequences: 5004
Number of extensions: 58377
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)