Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0871
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    28   0.067
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    24   1.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   4.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.7  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 286 GAASPGVR-ARHALSSPA-TMHTAASSSVSGKPTAAPAGDTCLKL 158
           G +SP  R  RH +     T HT  S +  G P   PA   C +L
Sbjct: 261 GTSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQL 305


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 445 LCFKDRSHLRTESHGAKDHLRLTLEQKRNDAKITAELFKNV 567
           +C++ +     ES   ++ LRL  +   N A+ITA  F ++
Sbjct: 291 VCYEYQDRFSDESKKRRELLRLAQQVNANIAQITAANFFDI 331


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 PTASSRRDTRPKHSNYSARKRAGT 443
           PT +  ++T+P+ +  +A KRA T
Sbjct: 70  PTVTEIQETQPQRTKPTAGKRART 93


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 477 RVSWSKRPSSVNIGAKT*RREDH 545
           R    +RP S +I  K  RR+DH
Sbjct: 100 RTHTDERPYSCDICGKAFRRQDH 122


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 250 LSSPATMHTAASSSVSGKPTAA 185
           ++SP+  +T+ SS+ S KP ++
Sbjct: 423 ITSPSNTNTSTSSTNSNKPNSS 444


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 PTASSRRDTRPKHSNYSARKRAGT 443
           PT +  ++T+P+ +  +A KRA T
Sbjct: 61  PTVTEIQETQPQRTKPTAGKRART 84


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  RDSLPITTLNGAPGFINLCDA 98
           R S P +T +G+PGF+    A
Sbjct: 71  RISSPSSTKSGSPGFLTYTKA 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,915
Number of Sequences: 336
Number of extensions: 2698
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)