Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0871
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 145 5e-36
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 29 0.51
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.89
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 2.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 4.8
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 6.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.3
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 26 6.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 8.3
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 145 bits (352), Expect = 5e-36
Identities = 70/120 (58%), Positives = 87/120 (72%)
Frame = +2
Query: 254 VACAYAGARGADRMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKK 433
+ACAYA ARGADRMSSFGDF+ALSD DV TA IISREVSDGVIAPGY PEAL+LL KKK
Sbjct: 291 LACAYARARGADRMSSFGDFIALSDTVDVCTARIISREVSDGVIAPGYEPEALELLKKKK 350
Query: 434 GGNYCVLKIDPTYEPSLMEQKTIFG*HWSKNVTTRRSPLNFSRTFVTTKKDLPSNAVXDL 613
GG YCVL++DP Y P+ +E + ++G ++ + + V+ KDLP +A+ DL
Sbjct: 351 GGKYCVLQMDPKYVPAEIETRQVYGISLQQHRNHAKIDFSLFEKVVSKNKDLPKSALIDL 410
Score = 109 bits (263), Expect = 3e-25
Identities = 51/79 (64%), Positives = 60/79 (75%)
Frame = +3
Query: 3 PHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELKEALSLPAAASFKHVSPA 182
PHQ PAQ F + LP L G+PG+INL DALN+W LVKEL+E + +PAAASFKHVSPA
Sbjct: 205 PHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALNSWPLVKELRENIGIPAAASFKHVSPA 264
Query: 183 GAAVGLPLTDEEAAVCMVA 239
GAAVGLPL+D E V V+
Sbjct: 265 GAAVGLPLSDVEKKVYFVS 283
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +1
Query: 508 LTLEQKRNDAKITAELFKNVRDHQEGFAIERRXGPSSWATIALKYTQSNSVCF 666
++L+Q RN AKI LF+ V + + AT ALKYTQSNSVC+
Sbjct: 376 ISLQQHRNHAKIDFSLFEKVVSKNKDLP-KSALIDLVIATTALKYTQSNSVCY 427
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 197 AHGSSGRGHVLEASRSREAQRFLQLLDELPG 105
+ G G+G S + AQ F Q+LDELPG
Sbjct: 264 SEGGGGKGIRQVTSTEKFAQAFQQVLDELPG 294
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 211 SVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLS 38
+ S P P GD+ + A SAS SS T+ + S S +I G+ + V L+
Sbjct: 128 ATSDAPNPIPRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLT 185
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/64 (23%), Positives = 36/64 (56%)
Frame = -3
Query: 283 AASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQA 104
++SP + +SP++ +++SSS S +++ + + +++ S+S SS +S +
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 200
Query: 103 FSAS 92
S+S
Sbjct: 201 SSSS 204
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = -3
Query: 247 SSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQAFSASHRLINPGA 68
SS ++ T++SS++S +++P+ + ++ + S+SFSS S + ++S L + +
Sbjct: 330 SSFSSSPTSSSSTISSS-SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSS 388
Query: 67 PFS 59
S
Sbjct: 389 SSS 391
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 87 LCDALNAWQLVKELKEALSLPAAASFK 167
LCD LN ++LV L LP +SF+
Sbjct: 237 LCDQLNDYELVPTLNAISPLPLRSSFR 263
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -3
Query: 286 GAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTS-C 110
GAAS + + SS + T++SSS + T++ + + +++ + S+S S +S
Sbjct: 113 GAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRS 172
Query: 109 QAFSASHR 86
+ + SHR
Sbjct: 173 SSRTTSHR 180
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = -3
Query: 307 PEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASF 128
P + + ++SP + + SS + +++SSS S +++ + + +++ + SAS
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSS-SSSSKSSASP 212
Query: 127 SSLTSCQAFSAS 92
SS S FS+S
Sbjct: 213 SSSKSSSKFSSS 224
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 253 ALSSPATMHTAASSSVSGKPTAAPAG 176
+L SP T H A++S ++ KP+ PAG
Sbjct: 424 SLPSPPTPH-ASASKLAAKPSVKPAG 448
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 93 DALNAWQLVKELKEALSLPAAASFKHVSPAGAAVG--LPLTDEEAAVCM 233
+ALN WQ + E + +L L AA ++ + A+ PL D VC+
Sbjct: 16 EALNNWQQLVEQRISLELEYAAKLAKLTKSIKAIKQCAPLNDLTKQVCV 64
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 78 FINLCDALNA--WQLVKELKEALSLPAAA 158
F+N D + A W++++++ L +PAAA
Sbjct: 203 FVNKMDRMGADPWKVIQQINTKLKIPAAA 231
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 283 AASPGVRARHALSSPATMHTA-ASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQ 107
A+S + + A SS T ++ ASSS + +A+P + +A AS S+ +S
Sbjct: 70 ASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSL 129
Query: 106 AFSA 95
A S+
Sbjct: 130 ASSS 133
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 268 VRARHALSSPATMHTAASSSVSGKPTA-APAGDTCLKLAAAGRLSASFSSLTSCQAFSAS 92
V + A S+ +T T+A+S+ S ++ AP+ +T L + S SS S A SAS
Sbjct: 378 VNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSAS 437
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 268 VRARHALSSPATMHTAASSSVSGKPTA-APAGDTCLKLAAAGRLSASFSSLTSCQAFSAS 92
V + A S+ +T T+A+S+ S ++ AP+ +T L + S SS S A SAS
Sbjct: 492 VNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSAS 551
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 81 INLCDALNAWQLVKELKEALSLPAAASFKHVSPAGAA 191
I+ L +LVK+LKE L++ A V+PA A+
Sbjct: 84 ISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVAS 120
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 384 MTPSDTSLEMMVAVLTSQGSESATKSPKELMRSAPRAPAYAHAT 253
++ S TS+ + L S S TKSP +SAPRA + + T
Sbjct: 314 LSKSSTSIATVAPSLASVSS--VTKSPSPTPQSAPRAQSASTET 355
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 211 SVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQA 104
+++G+P A + D KLAA G + SSL+ Q+
Sbjct: 6 ALNGQPLAGKSDDLANKLAAFGLSQPNHSSLSEQQS 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,510
Number of Sequences: 5004
Number of extensions: 45451
Number of successful extensions: 184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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