Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0871
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   1e-35
SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23)           30   1.7  
SB_43797| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)                 30   1.7  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  29   2.9  
SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)                  29   2.9  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        29   3.8  
SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)                     29   5.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      29   5.1  
SB_40857| Best HMM Match : GLTT (HMM E-Value=0.85)                     28   6.7  
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   6.7  
SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)               28   6.7  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   28   8.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  146 bits (355), Expect = 1e-35
 Identities = 70/120 (58%), Positives = 89/120 (74%)
 Frame = +2

Query: 254 VACAYAGARGADRMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKK 433
           +A AYA ARGADRMSSFGD+VALSD CD++TA IISREVSDGVIAP Y  EAL++L KKK
Sbjct: 328 LATAYARARGADRMSSFGDWVALSDECDLATAKIISREVSDGVIAPSYQNEALEVLKKKK 387

Query: 434 GGNYCVLKIDPTYEPSLMEQKTIFG*HWSKNVTTRRSPLNFSRTFVTTKKDLPSNAVXDL 613
           GG YC+L++DP+YEP  +E +TIFG    +     +   +  +  +T +KDLP +AV DL
Sbjct: 388 GGKYCILQMDPSYEPPALESRTIFGLQLEQLRNNAKIDADVFKNVMTKRKDLPESAVRDL 447



 Score =  129 bits (311), Expect = 3e-30
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 3   PHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELKEALSLPAAASFKHVSPA 182
           PHQKPAQ+ T    LP+  LNGAPGFINLCDA N+WQLV+EL ++L +PAAASFKHVSPA
Sbjct: 241 PHQKPAQLMTMEPELPVKVLNGAPGFINLCDAFNSWQLVRELHQSLGIPAAASFKHVSPA 300

Query: 183 GAAVGLPLTDEEAAVCMV 236
           GAAVG PLT +EA VCMV
Sbjct: 301 GAAVGTPLTPDEAKVCMV 318



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 28/53 (52%), Positives = 36/53 (67%)
 Frame = +1

Query: 508 LTLEQKRNDAKITAELFKNVRDHQEGFAIERRXGPSSWATIALKYTQSNSVCF 666
           L LEQ RN+AKI A++FKNV   ++    E      + A+IALKYTQSNSVC+
Sbjct: 413 LQLEQLRNNAKIDADVFKNVMTKRKDLP-ESAVRDLTVASIALKYTQSNSVCY 464


>SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23)
          Length = 522

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = -3

Query: 319 RHEVPEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRL 140
           R   P   HA GAA+P      A+ + A   T+   S     TA  AG + + +AAA  L
Sbjct: 185 RQSAPAKVHAEGAAAPDRGGAGAVPAAAAHSTSGEKS---DHTALKAGLSAIAVAAA--L 239

Query: 139 SASFSSLTSCQAFSASH 89
           +   +S     A SA+H
Sbjct: 240 AIKATSNAKENALSAAH 256


>SB_43797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 391 GILARSTQTTQQEKGRELLCFKD-RSHLRTESHGAKDHLRLTLEQKRNDAKITAELFKN 564
           G L R TQ  +Q++ R+ L  +  +   + E H  ++H R  +  K  + KI ++L+K+
Sbjct: 17  GGLGRETQIKRQQQKRQTLREETAKKRTKLEQH-QREHFRQQISNKFTEKKIKSDLYKS 74


>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
          Length = 346

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 283 AASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAA 152
           AA+    A  A ++P T+  AA++  +G+PT APA  T  + A+
Sbjct: 302 AATTPPTAAPAATTPPTVAPAATTPPTGEPTGAPAATTPTEAAS 345


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 250 LSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTS 113
           L SP+   T+ S+S++G PT  P+ D   K  +    S S +SL S
Sbjct: 515 LGSPSESSTSQSASLNGSPTERPSSD---KKVSIDGFSTSHTSLKS 557


>SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = -3

Query: 319 RHEVPEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAA 149
           R   P   HA GAA+P      A+ + A   T+   S     TA  AG T L +AAA
Sbjct: 566 RQSAPAKVHAEGAAAPDRGGAGAVPAAAAHSTSGEKS---DHTALKAGLTALAVAAA 619


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -3

Query: 307 PEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGR 143
           P G+ + G + PG       S P       +S VS  PTA P   +       GR
Sbjct: 526 PGGSTSGGTSGPGGATSGGTSGPGGATLGGTSGVSTAPTAVPTTSSATSGGGGGR 580


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 154 AAGRLSASFSSLTSCQAFSASHRLINP 74
           AA  +S  F  +T  + FSASHRL NP
Sbjct: 881 AAVTMSRPFVYITRTETFSASHRLHNP 907


>SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)
          Length = 356

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = -3

Query: 319 RHEVPEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAA 149
           +   P   HA GAA       HA+ S     TAA +   G  TA  AG + L +AAA
Sbjct: 299 KDSAPAKVHAEGAAPAPSPRTHAVHSM----TAAGTGEKGDHTALKAGLSALAVAAA 351


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 406 STQTTQQEKGRELLCFKDRS----HLRTESHGAKDHLRLTLEQKRNDAKITAELFKNVRD 573
           S + +Q  +  + +C+KD S    HL+ E   + D+   T      DA+ T+   +++ D
Sbjct: 204 SVRVSQHFQSAKQMCYKDNSIENDHLKLEDRCSGDNRNATCNFCGKDARKTSSTKRSLSD 263

Query: 574 HQEGFAIE 597
             +G   E
Sbjct: 264 DGDGHCCE 271


>SB_40857| Best HMM Match : GLTT (HMM E-Value=0.85)
          Length = 216

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/70 (31%), Positives = 27/70 (38%)
 Frame = -3

Query: 301 GAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSS 122
           GA   G  S GV        P+   T AS++  GKP+    GD        G   AS + 
Sbjct: 96  GASTTGKPSMGVTGASTTGKPSMGVTGASTT--GKPSMGVTGDLTTGKPFMGATGASTTG 153

Query: 121 LTSCQAFSAS 92
             S  A  AS
Sbjct: 154 KPSMGAAGAS 163


>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 448 CFKDRSHLRTESHGAKDHLRLTLEQKRNDAKITAELFKNV 567
           C+  R  +   S G + +LRL  E   +   +T EL  N+
Sbjct: 36  CYNIRGQIEPNSTGIQQNLRLPFENTMHQMPVTRELITNM 75


>SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)
          Length = 263

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 391 GILARSTQTTQQEKGRELLCFKD-RSHLRTESHGAKDHLRLTLEQKRNDAKITAELFKN 564
           G L R TQ  +Q++ ++ L  +  +   + E H  ++H R  +  K  + KI ++L+K+
Sbjct: 112 GGLGRETQIKRQQQKKQTLREETAKKRTKLEQH-QREHFRQQISNKFAEKKIKSDLYKS 169


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -3

Query: 316  HEVPEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGK-PTAAPAGDTC 167
            H  PEG  +    SPG    H  +    +  A    + GK P   PAG  C
Sbjct: 888  HYCPEGTASPLPCSPGTYMNHTTADKCYICPAGHYCIDGKHPEPCPAGWYC 938


>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/81 (25%), Positives = 40/81 (49%)
 Frame = -3

Query: 298 AHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSL 119
           A +  A+S  + +  +LS+ A+ + A SS ++    A+ A  +    ++    SAS SS 
Sbjct: 91  ASSASASSASMSSASSLSASASSNIA-SSDIASSANASSAKTSSASASSNIASSASASSD 149

Query: 118 TSCQAFSASHRLINPGAPFSV 56
            +  A ++S       APF++
Sbjct: 150 VASSAIASSASASLTSAPFAI 170


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/81 (25%), Positives = 40/81 (49%)
 Frame = -3

Query: 298 AHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSL 119
           A +  A+S  + +  +LS+ A+ + A SS ++    A+ A  +    ++    SAS SS 
Sbjct: 347 ASSASASSASMSSASSLSASASSNIA-SSDIASSANASSAKTSSASASSNIASSASASSD 405

Query: 118 TSCQAFSASHRLINPGAPFSV 56
            +  A ++S       APF++
Sbjct: 406 VASSAIASSASASLTSAPFAI 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,367,350
Number of Sequences: 59808
Number of extensions: 387750
Number of successful extensions: 1224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)