Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0871
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 128 3e-30
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 128 3e-30
U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical pr... 118 6e-27
U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna syn... 29 4.5
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 29 4.5
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 128 bits (310), Expect = 3e-30
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +2
Query: 254 VACAYAGARGADRMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKK 433
+A AYA ARGADRMSSFGDF+ALS+ CD TA II+REVSDGV+AP + P AL LL+KKK
Sbjct: 171 LAAAYARARGADRMSSFGDFIALSEKCDELTAKIINREVSDGVVAPDFDPAALSLLAKKK 230
Query: 434 GGNYCVLKIDPTYEPSLMEQKTIFG 508
GNYCVLKI+P Y PS E++T+FG
Sbjct: 231 NGNYCVLKINPNYLPSETEERTVFG 255
Score = 115 bits (277), Expect = 3e-26
Identities = 52/80 (65%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 PHQKP-AQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELKEALSLPAAASFKHVSP 179
PHQK A+++ D +PI LNG+PG+IN+ D LN WQLVKEL +A +PAAASFKHVSP
Sbjct: 81 PHQKDDAELYIVEDEMPIKVLNGSPGYINILDGLNGWQLVKELSDATKMPAAASFKHVSP 140
Query: 180 AGAAVGLPLTDEEAAVCMVA 239
AGAAVGLPL + EAA CMV+
Sbjct: 141 AGAAVGLPLNETEAACCMVS 160
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/53 (50%), Positives = 30/53 (56%)
Frame = +1
Query: 508 LTLEQKRNDAKITAELFKNVRDHQEGFAIERRXGPSSWATIALKYTQSNSVCF 666
L L QKRN+A I AE F NV ++ ATIALKY QSNSVCF
Sbjct: 256 LRLRQKRNNAVINAETFNNVVGSANELN-KQAIDDLIVATIALKYAQSNSVCF 307
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 128 bits (310), Expect = 3e-30
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +2
Query: 254 VACAYAGARGADRMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKK 433
+A AYA ARGADRMSSFGDF+ALS+ CD TA II+REVSDGV+AP + P AL LL+KKK
Sbjct: 301 LAAAYARARGADRMSSFGDFIALSEKCDELTAKIINREVSDGVVAPDFDPAALSLLAKKK 360
Query: 434 GGNYCVLKIDPTYEPSLMEQKTIFG 508
GNYCVLKI+P Y PS E++T+FG
Sbjct: 361 NGNYCVLKINPNYLPSETEERTVFG 385
Score = 115 bits (277), Expect = 3e-26
Identities = 52/80 (65%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 PHQKP-AQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELKEALSLPAAASFKHVSP 179
PHQK A+++ D +PI LNG+PG+IN+ D LN WQLVKEL +A +PAAASFKHVSP
Sbjct: 211 PHQKDDAELYIVEDEMPIKVLNGSPGYINILDGLNGWQLVKELSDATKMPAAASFKHVSP 270
Query: 180 AGAAVGLPLTDEEAAVCMVA 239
AGAAVGLPL + EAA CMV+
Sbjct: 271 AGAAVGLPLNETEAACCMVS 290
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/53 (50%), Positives = 30/53 (56%)
Frame = +1
Query: 508 LTLEQKRNDAKITAELFKNVRDHQEGFAIERRXGPSSWATIALKYTQSNSVCF 666
L L QKRN+A I AE F NV ++ ATIALKY QSNSVCF
Sbjct: 386 LRLRQKRNNAVINAETFNNVVGSANELN-KQAIDDLIVATIALKYAQSNSVCF 437
>U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical
protein C55F2.1a protein.
Length = 420
Score = 118 bits (283), Expect = 6e-27
Identities = 53/76 (69%), Positives = 63/76 (82%)
Frame = +2
Query: 281 GADRMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLKI 460
GADRMSSFGDF+ALS+ CD TA II+REVSDGV+AP + P AL LL+KKK GNYCVLKI
Sbjct: 102 GADRMSSFGDFIALSEKCDELTAKIINREVSDGVVAPDFDPAALSLLAKKKNGNYCVLKI 161
Query: 461 DPTYEPSLMEQKTIFG 508
+P Y PS E++T+FG
Sbjct: 162 NPNYLPSETEERTVFG 177
Score = 104 bits (249), Expect = 7e-23
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +3
Query: 45 LPITTLNGAPGFINLCDALNAWQLVKELKEALSLPAAASFKHVSPAGAAVGLPLTDEEAA 224
+PI LNG+PG+IN+ D LN WQLVKEL +A +PAAASFKHVSPAGAAVGLPL + EAA
Sbjct: 1 MPIKVLNGSPGYINILDGLNGWQLVKELSDATKMPAAASFKHVSPAGAAVGLPLNETEAA 60
Query: 225 VCMVA 239
CMV+
Sbjct: 61 CCMVS 65
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 622 ATIALKYTQSNSVCF 666
ATIALKY QSNSVCF
Sbjct: 249 ATIALKYAQSNSVCF 263
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 508 LTLEQKRNDAKITAELFKNV 567
L L QKRN+A I AE F NV
Sbjct: 178 LRLRQKRNNAVINAETFNNV 197
>U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform b protein.
Length = 454
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 578 WWSRTFLKSSAVIFASLRFCSNVNRRWSFAP*DSVRKW-DRSLK 450
W+S K+ + + + C V R WSFA +S+++W D +K
Sbjct: 102 WYSEVITKAEMIEYYDVSGCY-VLRPWSFAVWESIQEWFDSGIK 144
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 578 WWSRTFLKSSAVIFASLRFCSNVNRRWSFAP*DSVRKW-DRSLK 450
W+S K+ + + + C V R WSFA +S+++W D +K
Sbjct: 102 WYSEVITKAEMIEYYDVSGCY-VLRPWSFAVWESIQEWFDSGIK 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,788
Number of Sequences: 27780
Number of extensions: 275160
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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