Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0871
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 402 GEYPGAMTPSDTSLEMMVAVLTSQGSESATKSPKELMRSAPR 277
           G  P  +TP+ T+++ ++     + +E  T  P +     PR
Sbjct: 154 GSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPR 195


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 105 AWQLVKELKEALSLPAAASFKHVSPAGAAVGLPL 206
           AW          S PA   FK VS       LP+
Sbjct: 28  AWWFWTATSHEASAPAEGKFKTVSKVPGPFSLPI 61


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 723 VECATCCPAPMP 688
           VE  +CCP P P
Sbjct: 190 VEYYSCCPEPYP 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,965
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)