Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0871
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28420.1 68414.m03494 homeobox transcription factor, putative...    31   0.59 
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    31   1.0  
At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   4.1  
At5g13260.1 68418.m01523 expressed protein                             28   5.5  
At4g05631.1 68417.m00873 hypothetical protein                          28   5.5  
At2g33060.1 68415.m04054 leucine-rich repeat family protein cont...    28   5.5  
At5g42370.1 68418.m05159 expressed protein                             28   7.2  
At5g33290.1 68418.m03948 exostosin family protein contains Pfam ...    28   7.2  
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ...    27   9.6  
At1g32690.1 68414.m04031 expressed protein similar to hypothetic...    27   9.6  

>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = +1

Query: 478 ESHGAKDHLRLTLEQKRNDAKITAELFKNVRDHQE 582
           E+HG KD  +L +++K+N+ ++  E+ +N R+ ++
Sbjct: 376 ENHGPKDLEKLEIQRKKNEERMRKEMERNERERRK 410


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = -3

Query: 310 VPEGAHAVGAASPGVRARHALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSAS 131
           +P  A +  AA+PG     +++ P   H+  SSS    PT +P G T     A    S+S
Sbjct: 133 IPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSS-PVSPTTSPPGSTTPPGGAHSPKSSS 191

Query: 130 FSSLTSCQAFSASHRLINPGAP 65
             S  +    S + +  +P +P
Sbjct: 192 AVSPATSPPGSMAPKSGSPVSP 213


>At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB proteins from Homo
           sapiens [SP|Q13686], Caulobacter crescentus
           [GI:2055386]; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 345

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 39  DSLPITTLNGAPGFINLCDALNAWQLVKELKEALS 143
           DS P+  ++  PGF  + DAL+  +  K +KE+L+
Sbjct: 74  DSSPVFCIDNRPGFYFIPDALSLKEQCKWIKESLT 108


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -3

Query: 253 ALSSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTS 113
           A SSPA  H A SSSV+       A +   K AAA RL+   +S T+
Sbjct: 28  APSSPARHHHARSSSVTNMSNVKRAQNVAAK-AAAQRLAKVMASQTN 73


>At4g05631.1 68417.m00873 hypothetical protein
          Length = 293

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 469 LRTESHGAKDHLRLTLEQKRNDAKITAELFKNVRDHQEGFAIERRXG 609
           +R    G+K+ LR +L+ + +   +T  L K+ RD      +ER  G
Sbjct: 217 VRASLKGSKEQLRGSLQNETDKRSVTTRLRKSTRDVSLELEVERVTG 263


>At2g33060.1 68415.m04054 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 808

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 148 GRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLSLVVNTWAGF 11
           G++ +SFS+L+       SH  +    PF   + KLS++V ++  F
Sbjct: 136 GQVPSSFSNLSQLNILDLSHNELTGSFPFVQNLTKLSILVLSYNHF 181


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 335 DVSTATIISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLKID 463
           DV+  T++   VS   + PG S       +K K   YC L+I+
Sbjct: 360 DVNGDTVLGTNVSLSELQPGGSNSLKDTTTKGKSQRYCTLEIE 402


>At5g33290.1 68418.m03948 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 500

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 253 ALSSPATMHTAASSSVSGKPTAAPAG--DTCLKLAAAGRLSASFS 125
           ++SSP   +T  +S VS  P  +P G  +T   + A+   S+SFS
Sbjct: 51  SISSPLEQNTTNTSFVSASPPLSPLGQSNTTNTILASSSSSSSFS 95


>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 396

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 215 FIREWQAHGSSGRGHVLEASRSREAQRFLQLLDELPGV 102
           +  + Q HG + +G V E  RS+  + F  L+D   GV
Sbjct: 342 YTNQGQVHGYANQGQVQEPGRSKGRKMFSILMDLTVGV 379


>At1g32690.1 68414.m04031 expressed protein similar to hypothetical
           protein GB:AAC61817 GI:3668085 from [Arabidopsis
           thaliana]
          Length = 200

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 247 SSPATMHTAASSSVSGKPTAAPAGDTCLKLAAAGRLSASFSSLTSCQ-AFSASHRLINPG 71
           SS A +  + SSS S    +  AGD    ++  G +    +SL  C+ AF  S  +  P 
Sbjct: 49  SSRAAVSFSPSSSSSSSSFSIFAGDISFNISGVGSV-GRVASLIECEPAFRRSKSMAIPI 107

Query: 70  APFSVV 53
            P SV+
Sbjct: 108 KPDSVI 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,002
Number of Sequences: 28952
Number of extensions: 262498
Number of successful extensions: 914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)