Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0869
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.8  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 66  YTRCDICTCTLKFAFLLCVR 125
           +  C +CTC  K+  + C R
Sbjct: 771 FDSCTVCTCDAKYLEIKCKR 790


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 228 KLVTSVEFCFFIKSMMVCSIS-VALVRLYI-IPESVLVHTKGTRISKC 91
           +L  +  FC F+ +++ CS++  AL  L   +  S+L+      I  C
Sbjct: 36  RLSKAKSFCTFVAALVYCSVTFFALSELLTDLATSILLKVSSLLIGFC 83


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 207 FCFFIKSMMVCSISVALVRLY-IIPESVLV 121
           FC+    +++C+I++A  + Y +I E + V
Sbjct: 175 FCYLWVLILICNIALAFKQRYQLINEQMAV 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,072
Number of Sequences: 336
Number of extensions: 2594
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)