Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0869
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    25   7.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   7.0  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 250 YGLERCYDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPT 372
           +G++  +      +  YP T H   +Y+P   + +   +PT
Sbjct: 163 FGIQSAHPYISSLNSNYPTTWHFASHYYPTDSKQLVKYHPT 203


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 128 TDSGMMYNRTSATLMLQTIMLLMKKQNSTDVTNFPAGFSDDMDWSDVMT 274
           + +GM  +  S T  L++ ++ +   N+  ++ FP   S+ + W+  +T
Sbjct: 18  SSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTIT 66


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 188 LLMKKQNSTDVTNFPAGFSDDMDWSDVMTSTDVFLKPTRGR-STDPI-IISLHLSSQWXY 361
           +   KQ  +   NF    +DD+ WSDV         P   R + + + + + H +S    
Sbjct: 1   MAFNKQAESKKPNFLVIVADDLGWSDVSPFGSEIHTPNIERLAKEGVRLTNFHTASACSP 60

Query: 362 GIQLLLAGTEKY 397
              +LL+GT+ +
Sbjct: 61  TRSMLLSGTDNH 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,952
Number of Sequences: 5004
Number of extensions: 40360
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)