Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0869
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0056 + 17693332-17693603,17694298-17694520,17695420-176956...    29   3.1  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     28   5.4  

>01_05_0056 +
           17693332-17693603,17694298-17694520,17695420-17695668,
           17695771-17695824
          Length = 265

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -3

Query: 234 AGKLVTSVEFCFFIKSMMVCSISVALVRLYIIPESVLVHTKGTRISK---CTCKCHNVCT 64
           AG L+  + F F     + CS  VAL +L +IP S      G+ I      T +    C+
Sbjct: 185 AGGLIIGLTFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDSVLGATLQFSGYCS 244

Query: 63  FRGTGNSVI*SEIDP 19
            R     +I    DP
Sbjct: 245 VRKKVLPLIAQRFDP 259


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 261 LQSISSLNPAGKLVTSVEFCFFIKSMMVCSISVALVRLYIIPESVLVHTKGT 106
           L  I+++  AG LVT++   F +K +    +S+A+ R       +L H + +
Sbjct: 593 LSGIATVTVAGLLVTTMFHAFVLKDLFPNDVSIAITRKKPKFSKILAHFRSS 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,015
Number of Sequences: 37544
Number of extensions: 278744
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)