Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0869
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 114 KGTRISKCTCKCHNVCTFRGTGNSV 40
           K  +ISK T +C + C FRG  N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 114 KGTRISKCTCKCHNVCTFRGTGNSV 40
           K  +ISK T +C + C FRG  N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 188 LLMKKQNSTDVTNFPAGFSDDMDWSDVMTSTDVFLKPTRGRSTDP 322
           +  +K +    +  P    DD   +DV+   D   KP  GRST P
Sbjct: 92  IAFEKSDPRKFSKIPDDDDDDNSKTDVINKKDKKKKPLYGRSTSP 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,788
Number of Sequences: 27780
Number of extensions: 242730
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)