Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0869
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08530.1 68414.m00944 expressed protein                             30   1.1  
At4g25330.1 68417.m03645 expressed protein                             28   6.0  
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR...    28   6.0  

>At1g08530.1 68414.m00944 expressed protein
          Length = 257

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 255 SISSLNPAGKLVTSVEFCFFIKSMMVCSISVALVRLYI--IPESVLVHTKGTRISK 94
           S+ S+NP  KL  S +  F + + +VC+ SVA   L I  IP  V +    T  +K
Sbjct: 88  SLHSINPLAKLSLSDQ-AFLLLAFIVCTTSVAFTSLVITAIPTLVAMGRAATSFAK 142


>At4g25330.1 68417.m03645 expressed protein 
          Length = 229

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 188 LLMKKQNSTDVTNFPAGFSDDMDWSD 265
           L   +  +T  T F   F+DD+DWSD
Sbjct: 5   LTSNQSGATSPTVFSGEFADDVDWSD 30


>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1129

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 285  TSVDVITS-LQSISSLNPAGKLV---TSVEFCFFIKSMMVCSISVALVRLYIIPESV 127
            + ++V TS L  +  L PA  ++   + + FCFFI      ++S+   RL  IPE +
Sbjct: 951  SELEVFTSSLPKVRELRPAPTVMLLRSKLPFCFFIFYEHRVTLSLYKARLQYIPEEI 1007


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,850
Number of Sequences: 28952
Number of extensions: 219685
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)