Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0868
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 124 2e-29
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 121 1e-28
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 31 0.15
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 29 1.1
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 4.3
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 26 7.4
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 9.8
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 9.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.8
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 124 bits (298), Expect = 2e-29
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 GMPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPH 435
G P RYYGGNE+ID+ E L Q R+LEA+ L E+WGVNVQP+SGSPAN Y +++PH
Sbjct: 68 GYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPH 127
Query: 436 GRIMGLDLPDGGHLTHGFFTATK 504
R+MGLDLP GGHL+HGF T K
Sbjct: 128 DRLMGLDLPHGGHLSHGFSTPQK 150
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/94 (50%), Positives = 63/94 (67%)
Frame = +3
Query: 510 SATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGMSCYSRCLDYKRFREIRRR 689
SA S +F +MPY V+ ++G+IDYD L + A F+P++I+AG S Y+R +DYKR R+I
Sbjct: 153 SAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEM 212
Query: 690 KWELI*WLIMAHVSGLVAARCNTEPFEYCDIVTT 791
+ MAH+SGLVAA PFEY DIVTT
Sbjct: 213 CNAYL-LCDMAHISGLVAAGVIPSPFEYADIVTT 245
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = +2
Query: 89 KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEACPI 268
KLL + L E DP ++ I+ EK RQ+ + +IASENFTS V+ L S + NKYSE P
Sbjct: 12 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPG 71
Query: 269 NGTMGG 286
GG
Sbjct: 72 ARYYGG 77
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 121 bits (292), Expect = 1e-28
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +1
Query: 256 GMPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPH 435
G P RYYGGN++ID+IE L Q R+L A+ L +WGVNVQ SGSPAN VY I+ PH
Sbjct: 62 GYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPH 121
Query: 436 GRIMGLDLPDGGHLTHGFFTATKK 507
GR+MGLDLP GGHL+HG+ T TKK
Sbjct: 122 GRLMGLDLPSGGHLSHGYQTDTKK 145
Score = 103 bits (248), Expect = 2e-23
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +3
Query: 504 KKSATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGMSCYSRCLDYKRFREIR 683
K SA S +FESMPY+VDP +GLIDYD L A+LF+P++++AG S Y R +DY R R+I
Sbjct: 145 KISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIA 204
Query: 684 RRKWELI*WLIMAHVSGLVAARCNTEPFEYCDIVTT 791
+ + MAH+SGLV+A PFEY D+VTT
Sbjct: 205 DSVNAYL-VVDMAHISGLVSAGVIPSPFEYADVVTT 239
Score = 55.2 bits (127), Expect = 1e-08
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2
Query: 107 LWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEACPINGTMGG 286
L E DP + +I+ E DRQR+ + +IASENFTS V+ L S + NKYSE P GG
Sbjct: 12 LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 504 KKSATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGMSCYSRCL 656
K+ A E++P ++PKS L + + + P +IIA CYS CL
Sbjct: 925 KQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCL 975
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = +1
Query: 259 MPNQRYYG-GNEY-IDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEP 432
+ +Q Y G N++ I E+ + N+S +A + +G PYS NF+ Y VE
Sbjct: 1777 LQSQSYEGDSNDFGIREVPLSDANQSSQADSTSIDRYG----PYSSQKVNFSKYKDFVES 1832
Query: 433 HGRIM--GLDLPDGGHLTHGFFTATKKNLLRQYSLKACHI 546
+ D T F+ +NL +LK+ +
Sbjct: 1833 RPTFFQSSVTFTDADGSTRKTFSKRLENLTTSNTLKSLSV 1872
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 186 AIISSPAR*RSFSLTIISKSSGSASQRLLFSNLAL 82
+I+ S + S LT + KSSG AS + FSN +L
Sbjct: 397 SILQSDSLMISTQLTSVQKSSGFASYSVQFSNCSL 431
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +1
Query: 289 EYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPH 435
+++ E + L R+++A S + + PY SP + I PH
Sbjct: 15 QHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTISAPH 63
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 80 MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYS 253
++ + LN L E D + + +KD + G ++ +EN +L LS+ +N +S
Sbjct: 84 ITCQALNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLSTTGNNTFS 141
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 355 EEWGVNVQPYSGSPANFAVY 414
EE+G ++P G AN+ +Y
Sbjct: 57 EEYGSTIRPNEGEAANYGIY 76
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 173 LEMIASENFTSVPVLQCLSSCLHNKYSEACPINGTMGGMN 292
+ IAS ++TS+P + ++S + NGT G +
Sbjct: 825 ISSIASSSYTSIPSISSIASSFFDASGFTSIYNGTKAGFS 864
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,608,557
Number of Sequences: 5004
Number of extensions: 78897
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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