Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0868
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20792| Best HMM Match : SHMT (HMM E-Value=0)                        37   0.017
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    29   4.6  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_20792| Best HMM Match : SHMT (HMM E-Value=0)
          Length = 252

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 717 MAHVSGLVAARCNTEPFEYCDIVTT 791
           MAH+SGLVA+     PFEY D+VTT
Sbjct: 1   MAHISGLVASDVVPGPFEYADVVTT 25


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 473  CPPSGKSNPIILPWGSTMPV*TAKFAGEPEYGCTLTPHSSD 351
            C PSG++ P  +PW ++     AK  G  ++ C  T   +D
Sbjct: 939  CCPSGETTPSAVPWTNSYRRGAAKQWGTRKFSCQTTESWTD 979


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 643 TPDVSIIRGSVRFADANGSLSDG*LWLTYLDWLLPGVIPSRSNTAIL*PPTTP 801
           T D SI+   +R     G ++       +LD +   ++PS +  AI  PPTTP
Sbjct: 756 TVDFSIVIEGIRGTSYTGDIAIDDF--VFLDGISCSIVPSDAGGAITTPPTTP 806


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,771,309
Number of Sequences: 59808
Number of extensions: 580555
Number of successful extensions: 1234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)