Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4C48 Cluster: PREDICTED: similar to cullin 1; ...    45   0.002
UniRef50_Q4TBZ8 Cluster: Chromosome undetermined SCAF7068, whole...    38   0.21 
UniRef50_UPI0000EBC7A7 Cluster: PREDICTED: hypothetical protein ...    37   0.49 
UniRef50_Q6QRN4 Cluster: Cullin 1; n=2; Eutheria|Rep: Cullin 1 -...    37   0.49 
UniRef50_Q13616 Cluster: Cullin-1; n=49; Eukaryota|Rep: Cullin-1...    36   0.85 
UniRef50_Q6CT52 Cluster: Similar to sgd|S0002648 Saccharomyces c...    34   2.6  

>UniRef50_UPI00015B4C48 Cluster: PREDICTED: similar to cullin 1;
           n=2; Apocrita|Rep: PREDICTED: similar to cullin 1 -
           Nasonia vitripennis
          Length = 810

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 396 STSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYM 506
           S+ ++N+    L+Q D DQIWGDL+EGIEQV  +Q M
Sbjct: 42  SSHSSNQGPPGLKQIDLDQIWGDLKEGIEQVYNRQCM 78


>UniRef50_Q4TBZ8 Cluster: Chromosome undetermined SCAF7068, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF7068,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 796

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 405 NANRPQVP--LRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           ++NR Q P  LRQ   DQIW DL+ GI+QV  +Q M +
Sbjct: 2   SSNRTQNPHGLRQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>UniRef50_UPI0000EBC7A7 Cluster: PREDICTED: hypothetical protein
           isoform 3; n=1; Bos taurus|Rep: PREDICTED: hypothetical
           protein isoform 3 - Bos taurus
          Length = 776

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 405 NANRPQVP--LRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           ++NR Q P  L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 2   SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>UniRef50_Q6QRN4 Cluster: Cullin 1; n=2; Eutheria|Rep: Cullin 1 -
           Bos taurus (Bovine)
          Length = 187

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 405 NANRPQVP--LRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           ++NR Q P  L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 2   SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>UniRef50_Q13616 Cluster: Cullin-1; n=49; Eukaryota|Rep: Cullin-1 -
           Homo sapiens (Human)
          Length = 776

 Score = 35.9 bits (79), Expect = 0.85
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>UniRef50_Q6CT52 Cluster: Similar to sgd|S0002648 Saccharomyces
           cerevisiae YDR240c SNU56 U1 snRNA protein; n=1;
           Kluyveromyces lactis|Rep: Similar to sgd|S0002648
           Saccharomyces cerevisiae YDR240c SNU56 U1 snRNA protein
           - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 462

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 412 LALLVLIIHIKRVQINVETVIDFLY*L-NIFTENRIDPITNSVTKCNAIKLNNDRNHSVG 236
           LA +  I H K +    ET+ D++  L NI  E +  P+  SVT+    K N++R   V 
Sbjct: 176 LATVCSIQHFKEIYFEGETIWDWMKGLLNILNEWKFRPVNGSVTELLEHKANHERQRIVS 235

Query: 235 S 233
           S
Sbjct: 236 S 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,582,285
Number of Sequences: 1657284
Number of extensions: 9788530
Number of successful extensions: 22523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)