Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   2.4  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    26   5.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  IVPLSLTGRLRRTDKQSRTRKPNRS 173
           ++P SL GRL RT +   T KPN S
Sbjct: 145 LIPSSLCGRLLRTTEVLITPKPNTS 169


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 352 IDFLY*LNIFTENRIDPITNSVTKCNAIKLNNDRNHSVGSDYFTLIFIL 206
           IDF+   + + ENR+ P  N +T+ + +++      S   D  T IF+L
Sbjct: 92  IDFVKKHSCYNENRVFPFVNDITEDSLLEVLG----SACIDTLTAIFVL 136


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 533 YTDLCIVSYHVLFFXNLFDSLLKIAPYL 450
           YT LC+VS+H   F ++ DSLL+   Y+
Sbjct: 155 YT-LCLVSWHHHVFSHIRDSLLQNLLYM 181


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -1

Query: 295 NSVTKCNAIKLNNDRNHSVGSDY 227
           NS +  +++  N+D++ ++GS+Y
Sbjct: 142 NSTSNLSSVSTNSDKSRTIGSNY 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,745
Number of Sequences: 5004
Number of extensions: 45437
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)